INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MZ326168	Salmonella phage NINP13076	161329	44.417	Salmonella	Group I	Seunavirus	Seunavirus	Vequintavirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica CDC K-1891	High-quality	High-quality	100.000	AAI-based (high-confidence)	Seunavirus	Seunavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MZ322895	Klebsiella phage vB_KpnM_VAC13	174826	41.890	Klebsiella	Group I	Slopekvirus	Slopekvirus	Unclassified	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae	Complete	High-quality	100.000	DTR (high-confidence)	Slopekvirus	Slopekvirus eap3	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ322319	Pseudomonas phage vB_Pae-PA152	74434	53.562	Pseudomonas	Group I	Luzseptimavirus	Luzseptimavirus	Migulavirinae	Schitoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa ATCC 27853	High-quality	High-quality	100.000	AAI-based (high-confidence)	Luzseptimavirus	Luzseptimavirus KPP21	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ322028	Gordonia phage Posh	52295	66.110	Gordonia	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_39;immunity orf_43;antirepressor orf_47
MZ322027	Microbacterium phage BoomRoasted	17455	68.645	Microbacterium	Group I	Paopuvirus	Paopuvirus	Pelczarvirinae	Orlajensenviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium foliorum NRRL B-24224	High-quality	High-quality	100.000	AAI-based (high-confidence)	Paopuvirus	Paopuvirus bri160	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ322024	Mycobacterium phage JeTaime	75099	62.938	Mycobacterium	Group I	Kostyavirus	Kostyavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	98.630	AAI-based (high-confidence)	Kostyavirus	Kostyavirus kv244	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_52;immunity orf_55
MZ322022	Gordonia phage Float294	67545	65.577	Gordonia	Group I	Skysandvirus	Skysandvirus	Emilbogenvirinae	Zierdtviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	100.000	AAI-based (high-confidence)	Skysandvirus	Skysandvirus skysand	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ322018	Microbacterium phage Blab	62150	66.771	Microbacterium	Group I	Squashvirus	Squashvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium foliorum NRRL B-24224	Complete	High-quality	100.000	DTR (high-confidence)	Squashvirus	Squashvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ322016	Mycobacterium phage SoSeph	61968	65.009	Mycobacterium	Group I	Kratiovirus	Kratiovirus	Weiservirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	99.560	AAI-based (high-confidence)	Kratiovirus	Kratiovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_35;immunity orf_37;cro orf_38
MZ322014	Microbacterium phage Octopus	17368	68.511	Microbacterium	Group I	Paopuvirus	Paopuvirus	Pelczarvirinae	Orlajensenviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium foliorum NRRL B-24224	High-quality	High-quality	99.820	AAI-based (high-confidence)	Paopuvirus	Paopuvirus paopu	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic