INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MZ345003 | Xanthomonas phage M29 | 42891 | 59.644 | Xanthomonas | Group I | Foxunavirus | Foxunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Xanthomonas campestris pv. campestris | High-quality | High-quality | 97.640 | AAI-based (high-confidence) | Foxunavirus | Foxunavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MZ343158 | Mycobacterium phage RitSun | 55975 | 60.815 | Mycobacterium | Group I | Avanivirus | Avanivirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.550 | AAI-based (high-confidence) | Avanivirus | Avanivirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_51;antirepressor orf_55 |
| MZ342906 | Escherichia phage vB_EcoP_SU7 | 76626 | 42.054 | Escherichia | Group I | Suseptimavirus | Suseptimavirus | Gordonclarkvirinae | Mtkvariviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterotoxigenic Escherichia coli serovar O:139 | Complete | High-quality | 100.000 | DTR (high-confidence) | Suseptimavirus | Suseptimavirus SU7 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MZ336020 | Aeromonas phage pAh6.2TG | 51780 | 52.484 | Aeromonas | Group I | Phayathaivirus | Phayathaivirus | Nefertitivirinae | Chaseviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Aeromonas hydrophila BT09 | High-quality | High-quality | 98.380 | AAI-based (high-confidence) | Phayathaivirus | Phayathaivirus pAh62TG | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MZ334528 | Halorubrum tailed virus 28 | 35270 | 64.278 | Halorubrum | Group I | Pormufvirus | Pormufvirus | Unclassified | Suolaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Halorubrum sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MZ334527 | Haloarcula tailed virus 3 | 42293 | 51.063 | Haloarcula | Group I | Hatrivirus | Hatrivirus | Unclassified | Pyrstoviridae | Kirjokansivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Halorubrum sp. | High-quality | High-quality | 90.080 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MZ334526 | Halorubrum tailed virus 29 | 36603 | 60.793 | Halorubrum | Group I | Dpdavirus | Dpdavirus | Unclassified | Haloferuviridae | Kirjokansivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Halorubrum sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MZ334525 | Haloarcula tailed virus 2 | 63301 | 49.713 | Haloarcula | Group I | Eilatmyovirus | Eilatmyovirus | Unclassified | Soleiviridae | Thumleimavirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Halorubrum sp. | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MZ334524 | Haloarcula virus HCTV-16 | 104681 | 56.902 | Haloarcula | Group I | Hacavirus | Hacavirus | Unclassified | Druskaviridae | Thumleimavirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Haloarcula californiae | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MZ334523 | Haloarcula virus HVTV-2 | 102319 | 58.271 | Haloarcula | Group I | Tredecimvirus | Tredecimvirus | Unclassified | Druskaviridae | Thumleimavirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Haloarcula vallismortis | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic |