INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MZ820089 | Gordonia phage ChisanaKitsune | 88657 | 60.032 | Gordonia | Group I | Chidieberevirus | Chidieberevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia rubripertincta NRRL B-16540 | High-quality | High-quality | 99.830 | AAI-based (high-confidence) | Chidieberevirus | Chidieberevirus chisanakitsune | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MZ820088 | Streptomyces phage Katalie | 51271 | 65.587 | Streptomyces | Group I | Likavirus | Likavirus | Arquatrovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces lividans JI 1326 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Likavirus | Likavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | immunity orf_28;integrase orf_48 |
| MZ820087 | Arthrobacter phage Niobe | 43602 | 66.657 | Arthrobacter | Group I | Yangvirus | Yangvirus | Unclassified | Casidaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter globiformis B-2979 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Yangvirus | Yangvirus elezi | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MZ820084 | Microbacterium phage KatChan | 40349 | 63.005 | Microbacterium | Group I | Neferthenavirus | Neferthenavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microbacterium foliorum NRRL B-24224 | High-quality | High-quality | 99.860 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MZ820083 | Microbacterium phage Doobus | 41195 | 66.256 | Microbacterium | Group I | Dismasvirus | Dismasvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microbacterium foliorum NRRL B-24224 | High-quality | High-quality | 98.970 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| MZ818790 | Vibrio phage OPA17 | 75897 | 48.879 | Vibrio | Group I | Mardecavirus | Mardecavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio campbellii HY01 | Not-determined | Genome-fragment | New_genus | New_species | No hits were found with the default settings | lytic | |||
| MZ803112 | Synechococcus T7-like virus S-TIP28 | 45749 | 52.449 | Synechococcus | Group I | Tiranvirus | Tiranvirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. CC9605 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Tiranvirus | Tiranvirus STIP28 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_13 |
| MZ779063 | Staphylococcus phage vB_SauM-UFV_DC4 | 263185 | 25.029 | Staphylococcus | Group I | Madawaskavirus | Madawaskavirus | Wallmarkvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus UFV2030RH1 | High-quality | High-quality | 98.770 | AAI-based (high-confidence) | Madawaskavirus | Madawaskavirus DC4 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MZ779062 | Klebsiella phage pJN2-26 | 109952 | 48.999 | Klebsiella | Group I | Westmeadvirus | Westmeadvirus | Santaclaravirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | horse | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Westmeadvirus | Westmeadvirus pJN226 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MZ773939 | Pseudomonas phage PP9W | 47985 | 61.744 | Pseudomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa P9W | High-quality | High-quality | 98.130 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_71 |