INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MZ955866	Salmonella phage vB_SenS_TUMS_E4	43018	49.742	Salmonella	Group I	Jerseyvirus	Jerseyvirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Enteritidis derived from ATCC 13076	High-quality	High-quality	100.000	AAI-based (high-confidence)	Jerseyvirus	Jerseyvirus TUMSE4	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ936316	Acinetobacter phage APK20	42351	39.279	Acinetobacter	Group I	Friunavirus	Friunavirus	Beijerinckvirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Acinetobacter baumannii strain MAR 14-595	Complete	High-quality	100.000	DTR (high-confidence)	Friunavirus	Friunavirus APK20	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ936315	Acinetobacter phage APK15	41092	39.300	Acinetobacter	Group I	Friunavirus	Friunavirus	Beijerinckvirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Acinetobacter baumannii strain MAR 15-4788	Complete	High-quality	100.000	DTR (high-confidence)	Friunavirus	Friunavirus APK15	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ936314	Acinetobacter phage APK86	41297	39.250	Acinetobacter	Group I	Friunavirus	Friunavirus	Beijerinckvirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Acinetobacter baumannii strain 55-66	Complete	High-quality	100.000	DTR (high-confidence)	Friunavirus	Friunavirus APK86	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ927746	Pseudomonas phage Guyu	43141	54.839	Pseudomonas	Group I	Septimatrevirus	Septimatrevirus	Jondennisvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa 2072	High-quality	High-quality	100.000	AAI-based (high-confidence)	Septimatrevirus	Septimatrevirus guyu	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ927745	Pseudomonas phage Kaya	43067	54.292	Pseudomonas	Group I	Septimatrevirus	Septimatrevirus	Jondennisvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa 2081	High-quality	High-quality	100.000	AAI-based (high-confidence)	Septimatrevirus	Septimatrevirus kaya	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ926748	Pseudomonas phage AIIMS-Plu-RaNi	46647	64.452	Pseudomonas	Group I	Abidjanvirus	Abidjanvirus	Bradleyvirinae	Mesyanzhinovviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas luteola	Medium-quality	Genome-fragment	76.320	AAI-based (high-confidence)	Abidjanvirus	Abidjanvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ923531	Salmonella phage PRF-SP1	39732	50.340	Salmonella	Group I	Kayfunavirus	Kayfunavirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Paratyphi A	Complete	High-quality	100.000	DTR (high-confidence)	Kayfunavirus	Kayfunavirus PRFSP1	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MZ923504	Microcystis phage MinS1	49966	71.671	Microcystis	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microcystis aeruginosa	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_28;integrase orf_31
MZ911962	Escherichia phage PLYYY01	57025	44.737	Escherichia	Group I	Seuratvirus	Seuratvirus	Queuovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	High-quality	High-quality	95.700	AAI-based (high-confidence)	Seuratvirus	Seuratvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic