INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MZ997840 | Escherichia phage ULINTec6 | 44728 | 45.070 | Escherichia | Group I | Vectrevirus | Vectrevirus | Molineuxvirinae | Autosignataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli APEC 45 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Vectrevirus | Vectrevirus ULINTec6 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MZ997839 | Escherichia phage ULINTec4 | 45159 | 44.609 | Escherichia | Group I | Vectrevirus | Vectrevirus | Molineuxvirinae | Autosignataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli APEC 45 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Vectrevirus | Vectrevirus ULINTec4 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MZ997838 | Escherichia phage ULINTec2 | 40815 | 51.114 | Escherichia | Group I | Kagunavirus | Kagunavirus | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli APEC 45 | High-quality | High-quality | 94.920 | AAI-based (high-confidence) | Kagunavirus | Kagunavirus ULINTec2 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MZ995506 | Pasteurella phage vB_PmuP_PS30 | 38176 | 40.774 | Pasteurella | Group I | Wuhanvirus | Wuhanvirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pasteurella multocida | Complete | High-quality | 100.000 | DTR (high-confidence) | Wuhanvirus | Wuhanvirus PS07 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MZ995505 | Clostridium phage vB_CpeP_PMQ04 | 38947 | 30.613 | Clostridium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium perfringens | High-quality | High-quality | 99.580 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | antirepressor orf_26 |
| MZ995504 | Riemerella phage vB_RanS_PT03 | 44001 | 34.813 | Riemerella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Riemerella anatipestifer | High-quality | High-quality | 94.940 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | antirepressor orf_9;antirepressor orf_34 |
| MZ995503 | Pasteurella phage vB_PmuP_PS07 | 38038 | 40.772 | Pasteurella | Group I | Wuhanvirus | Wuhanvirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pasteurella multocida | High-quality | High-quality | 99.220 | AAI-based (high-confidence) | Wuhanvirus | Wuhanvirus PS07 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MZ983385 | Psychrobacillus phage PVJ1 | 53187 | 37.015 | Psychrobacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Psychrobacillus sp. GC2J1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | antirepressor orf_32;integrase orf_36 |
| MZ969646 | Bacillus phage BUCT082 | 125016 | 34.789 | Bacillus | Group I | Spbetavirus | Spbetavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus subtilis | High-quality | High-quality | 97.190 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_32;antirepressor orf_137;integrase orf_149 |
| MZ969012 | Mycobacterium phage Saroj | 54958 | 61.381 | Mycobacterium | Group I | Gracegardnervirinae | Unclassified | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycolibacterium smegmatis mc^2 155 | High-quality | High-quality | 97.710 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_44;cro orf_47;antirepressor orf_48 |