INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_001890 | Escherichia phage Qbeta | 4215 | 48.541 | Escherichia | Group IV | Qubevirus | Qubevirus | Unclassified | Fiersviridae | Norzivirales | Leviviricetes | Lenarviricota | Orthornavirae | Riboviria | Escherichia coli | High-quality | High-quality | 99.940 | AAI-based (high-confidence) | unknown | ||||
| NC_001884 | Bacillus phage SPBc2 | 134416 | 34.635 | Bacillus | Group I | Spbetavirus | Spbetavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus subtilis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_1;integrase orf_40;antirepressor orf_105 | |||
| NC_001835 | Lactococcus phage SK1 | 28451 | 34.512 | Lactococcus | Group I | Skunavirus | Skunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis | High-quality | High-quality | 93.830 | AAI-based (high-confidence) | lytic | ||||
| NC_001825 | Streptococcus phage Cp1 | 19343 | 38.831 | Streptococcus | Group I | Cepunavirus | Cepunavirus | Unclassified | Madridviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae | Complete | High-quality | 100.000 | ITR (high-confidence) | lytic | ||||
| NC_001741 | Chlamydiaunovirus Chp1 | 4877 | 36.498 | Unspecified | Group II | Chlamydiaunovirus | Chlamydiaunovirus | Unclassified | Betagokushoviridae | Gokushovirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Chlamydia psittaci | High-quality | High-quality | 99.030 | AAI-based (high-confidence) | unknown | ||||
| NC_001730 | Escherichia phage phiK | 6089 | 44.917 | Escherichia | Group II | Alphatrevirus | Alphatrevirus | Unclassified | Eubullaviridae | Bullavirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Unspecified | High-quality | High-quality | 99.990 | AAI-based (high-confidence) | unknown | ||||
| NC_001706 | Lactococcus phage c2 | 22172 | 36.307 | Lactococcus | Group I | Ceduovirus | Ceduovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_001697 | Haemophilus phage HP1 | 32355 | 40.006 | Haemophilus | Group I | Hpunavirus | Hpunavirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_6 | |||
| NC_001629 | Lactococcus phage bIL67 | 22195 | 35.990 | Lactococcus | Group I | Ceduovirus | Ceduovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_001628 | Pseudomonas phage PP7 | 3588 | 54.208 | Pseudomonas | Group IV | Pepevirus | Pepevirus | Unclassified | Fiersviridae | Norzivirales | Leviviricetes | Lenarviricota | Orthornavirae | Riboviria | Pseudomonas aeruginosa | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | unknown |