INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_002362 | Vibrio phage VfO3K6 | 8784 | 45.162 | Vibrio | Group II | Versovirus | Versovirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Vibrio parahaemolyticus | High-quality | High-quality | 94.340 | AAI-based (high-confidence) | lytic | ||||
| NC_002321 | Staphylococcus phage PVL | 41401 | 33.555 | Staphylococcus | Group I | Peeveelvirus | Peeveelvirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus ATCC 49775 | High-quality | High-quality | 97.650 | AAI-based (high-confidence) | temperate | integrase orf_30;cro orf_33;antirepressor orf_37 | |||
| NC_002214 | Streptococcus phage Sfi11 | 39807 | 38.556 | Streptococcus | Group I | Brussowvirus | Brussowvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | cro orf_34 | |||
| NC_002194 | Chlamydia phage 2 | 4563 | 40.938 | Chlamydia | Group II | Chlamydiaduovirus | Chlamydiaduovirus | Unclassified | Betagokushoviridae | Gokushovirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Chlamydia psittaci | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | unknown | ||||
| NC_002185 | Streptococcus phage 7201 | 35466 | 38.727 | Streptococcus | Group I | Moineauvirus | Moineauvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus thermophilus | High-quality | High-quality | 96.390 | AAI-based (high-confidence) | lytic | ||||
| NC_002180 | Chlamydia phage phiCPAR39 | 4532 | 40.622 | Chlamydia | Group II | Chlamydiaduovirus | Chlamydiaduovirus | Unclassified | Betagokushoviridae | Gokushovirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Chlamydophila pneumoniae AR39 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | unknown | ||||
| NC_002167 | Escherichia phage HK97 | 39732 | 49.786 | Escherichia | Group I | Byrnievirus | Byrnievirus | Hendrixvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 99.530 | AAI-based (high-confidence) | temperate | integrase orf_25;cro orf_38;antirepressor orf_39 | |||
| NC_002166 | Escherichia phage HK022 | 40751 | 49.483 | Escherichia | Group I | Shamshuipovirus | Shamshuipovirus | Hendrixvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_27 | |||
| NC_002072 | Streptococcus phage DT1 | 34815 | 39.072 | Streptococcus | Group I | Moineauvirus | Moineauvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus thermophilus | High-quality | High-quality | 93.970 | AAI-based (high-confidence) | lytic | ||||
| NC_002014 | Salmonella phage IKe | 6883 | 40.549 | Salmonella | Group II | Lineavirus | Lineavirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Escherichia coli | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | unknown |