INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_004333 | Burkholderia phage Bcep781 | 48247 | 63.330 | Burkholderia | Group I | Naesvirus | Naesvirus | Mascarenevirinae | Anamaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Burkholderia cepacia | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_004313 | Salmonella phage ST64B | 40149 | 51.015 | Salmonella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhimurium | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_27 | |||
| NC_004306 | Fibrovirus fs1 | 6340 | 43.423 | Unspecified | Group II | Fibrovirus | Fibrovirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Vibrio cholerae O139 | Medium-quality | Genome-fragment | 89.950 | AAI-based (high-confidence) | lytic | ||||
| NC_004305 | Lactobacillus phage phig1e | 42259 | 43.061 | Lactobacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_8 | |||
| NC_004303 | Streptococcus phage 01205 | 43075 | 38.261 | Streptococcus | Group I | Brussowvirus | Brussowvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_1 | |||
| NC_004175 | Pseudomonas phage phi12 | 4100 | 56.024 | Pseudomonas | Group III | Betacystovirus | Betacystovirus | Unclassified | Cystoviridae | Mindivirales | Vidaverviricetes | Duplornaviricota | Orthornavirae | Riboviria | Pseudomonas syringae | Low-quality | Genome-fragment | 31.080 | AAI-based (high-confidence) | unknown | ||||
| NC_004174 | Pseudomonas phage phi12 | 2322 | 56.977 | Pseudomonas | Group III | Betacystovirus | Betacystovirus | Unclassified | Cystoviridae | Mindivirales | Vidaverviricetes | Duplornaviricota | Orthornavirae | Riboviria | Pseudomonas syringae | Low-quality | Genome-fragment | 17.600 | AAI-based (high-confidence) | unknown | ||||
| NC_004173 | Pseudomonas phage phi12 | 6751 | 54.111 | Pseudomonas | Group III | Betacystovirus | Betacystovirus | Unclassified | Cystoviridae | Mindivirales | Vidaverviricetes | Duplornaviricota | Orthornavirae | Riboviria | Pseudomonas syringae | Medium-quality | Genome-fragment | 51.170 | AAI-based (high-confidence) | unknown | ||||
| NC_004172 | Pseudomonas phage phi13 | 6458 | 58.362 | Pseudomonas | Group III | Gammacystovirus | Gammacystovirus | Unclassified | Cystoviridae | Mindivirales | Vidaverviricetes | Duplornaviricota | Orthornavirae | Riboviria | Pseudomonas syringae | Low-quality | Genome-fragment | 47.420 | AAI-based (high-confidence) | unknown | ||||
| NC_004171 | Pseudomonas phage phi13 | 4213 | 57.869 | Pseudomonas | Group III | Gammacystovirus | Gammacystovirus | Unclassified | Cystoviridae | Mindivirales | Vidaverviricetes | Duplornaviricota | Orthornavirae | Riboviria | Pseudomonas syringae | Low-quality | Genome-fragment | 30.810 | AAI-based (high-confidence) | unknown |