INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_005856 | Escherichia phage P1 | 94800 | 47.311 | Escherichia | Group I | Punavirus | Punavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 92.740 | AAI-based (high-confidence) | temperate | antirepressor orf_44;parA orf_56;cro orf_99;cro orf_100 | |||
| NC_005841 | Enterobacteria phage ST104 | 41391 | 47.431 | Enterobacteria | Group I | Lederbergvirus | Lederbergvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella typhimurium DT104 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_4;integrase orf_15;antirepressor orf_26 | |||
| NC_005833 | Escherichia phage T1 | 48836 | 45.552 | Escherichia | Group I | Tunavirus | Tunavirus | Tunavirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 97.540 | AAI-based (high-confidence) | lytic | ||||
| NC_005830 | Captovirus AFV1 | 20869 | 36.940 | Unspecified | Group I | Captovirus | Captovirus | Unclassified | Ungulaviridae | Ligamenvirales | Tokiviricetes | Taleaviricota | Zilligvirae | Adnaviria | Acidianus infernus | Low-quality | Genome-fragment | 25.140 | HMM-based (lower-bound) | lytic | ||||
| NC_005822 | Lactococcus phage phiLC3 | 32172 | 35.509 | Lactococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis subsp. cremoris | High-quality | High-quality | 94.120 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_3;cro orf_5;antirepressor orf_6 | |||
| NC_005361 | Sulfolobus virus Kamchatka 1 | 17385 | 38.746 | Sulfolobus | Unclassified | Alphafusellovirus | Alphafusellovirus | Unclassified | Fuselloviridae | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Sulfolobus sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_6 | |||
| NC_005360 | Sulfolobus virus Ragged Hills | 16473 | 37.534 | Sulfolobus | Unclassified | Alphafusellovirus | Alphafusellovirus | Unclassified | Fuselloviridae | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Sulfolobus sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_7 | |||
| NC_005357 | Bordetella phage BPP-1 | 42493 | 65.408 | Bordetella | Group I | Rauchvirus | Rauchvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bordetella bronchiseptica | High-quality | High-quality | 99.600 | AAI-based (high-confidence) | temperate | integrase orf_5;cro orf_31;integrase orf_50 | |||
| NC_005356 | Staphylococcus phage 77 | 41708 | 33.533 | Staphylococcus | Group I | Biseptimavirus | Biseptimavirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 98.730 | AAI-based (high-confidence) | temperate | integrase orf_22;cro orf_25;antirepressor orf_28;antirepressor orf_32;integrase orf_63 | |||
| NC_005355 | Lactobacillus prophage Lj965 | 40190 | 35.141 | Lactobacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus johnsonii | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_1;antirepressor orf_21 |