INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_008617 | Staphylococcus phage phiNM3 | 44061 | 32.993 | Staphylococcus | Group I | Biseptimavirus | Biseptimavirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_6;antirepressor orf_10;integrase orf_33 | |||
| NC_008584 | Thermus phage phiYS40 | 152372 | 32.586 | Thermus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 98.100 | AAI-based (high-confidence) | lytic | ||||
| NC_008583 | Staphylococcus phage phinm1 | 43128 | 34.156 | Staphylococcus | Group I | Dubowvirus | Dubowvirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_4;antirepressor orf_8 | |||
| NC_008575 | Ralstonia phage RSS1 | 6662 | 62.609 | Ralstonia | Group II | Restivirus | Restivirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Ralstonia solanacearum | Medium-quality | Genome-fragment | 85.200 | AAI-based (high-confidence) | lytic | ||||
| NC_008574 | Ralstonia phage RSM1 | 9004 | 59.951 | Ralstonia | Group II | Habenivirus | Habenivirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_008562 | Microcystis phage LMM01 | 162109 | 45.953 | Microcystis | Group I | Fukuivirus | Fukuivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 95.800 | AAI-based (high-confidence) | temperate | antirepressor orf_9;antirepressor orf_23;integrase orf_176 | |||
| NC_008515 | Escherichia phage RB32 | 165890 | 35.340 | Escherichia | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 98.620 | AAI-based (high-confidence) | lytic | ||||
| NC_008464 | Stx2-converting phage 86 | 60238 | 49.067 | Unspecified | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 91.800 | AAI-based (high-confidence) | temperate | antirepressor orf_8;integrase orf_35;antirepressor orf_41;cro orf_64;cro orf_65 | |||
| NC_008376 | Geobacillus phage GBSV1 | 34683 | 44.379 | Geobacillus | Group I | Svunavirus | Svunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Geobacillus sp. 6k51 | Complete | High-quality | 100.000 | DTR (high-confidence) | temperate | integrase orf_43;antirepressor orf_49 | |||
| NC_008371 | Lactococcus virus jj50 | 27453 | 34.943 | Lactococcus | Group I | Skunavirus | Skunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis | High-quality | High-quality | 90.540 | AAI-based (high-confidence) | lytic |