INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_009237 | Burkholderia phage phiE255 | 37446 | 63.051 | Burkholderia | Group I | Bcepmuvirus | Bcepmuvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Burkholderia thailandensis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_37 | |||
| NC_009236 | Burkholderia phage phiE12-2 | 36690 | 64.617 | Burkholderia | Group I | Duodecimduovirus | Duodecimduovirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Burkholderia pseudomallei | High-quality | High-quality | 98.630 | AAI-based (high-confidence) | lytic | ||||
| NC_009235 | Burkholderia phage phi644-2 | 48674 | 60.449 | Burkholderia | Group I | Stanholtvirus | Stanholtvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Burkholderia pseudomallei | High-quality | High-quality | 92.290 | AAI-based (high-confidence) | lytic | ||||
| NC_009234 | Burkholderia phage phiE202 | 35741 | 65.429 | Burkholderia | Group I | Tigrvirus | Tigrvirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Burkholderia thailandensis | High-quality | High-quality | 95.400 | AAI-based (high-confidence) | temperate | integrase orf_9 | |||
| NC_009232 | Salmonella phage SETP3 | 42572 | 49.852 | Salmonella | Group I | Jerseyvirus | Jerseyvirus | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.350 | AAI-based (high-confidence) | lytic | ||||
| NC_009231 | Clostridioides phage phiC2 | 56538 | 28.726 | Clostridioides | Group I | Yongloolinvirus | Yongloolinvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | temperate | cro orf_5;integrase orf_51;antirepressor orf_57 | |||
| NC_009018 | Streptococcus phage phi3396 | 38528 | 37.482 | Streptococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus dysgalactiae subsp. equisimilis NS3396 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_1;antirepressor orf_7;integrase orf_25 | |||
| NC_009016 | Vibrio phage VP882 | 38197 | 56.952 | Vibrio | Group I | Hapunavirus | Hapunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio parahaemolyticus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | parA orf_41 | |||
| NC_009015 | Burkholderia phage BcepF1 | 72415 | 55.893 | Burkholderia | Group I | Bcepfunavirus | Bcepfunavirus | Unclassified | Lindbergviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Burkholderia ambifaria | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_009014 | Erwinia phage Era103 | 45445 | 49.838 | Erwinia | Group I | Eracentumvirus | Eracentumvirus | Molineuxvirinae | Autosignataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Erwinia amylovora NCPPB 595 | High-quality | High-quality | 99.360 | AAI-based (high-confidence) | lytic |