INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_009761 | Staphylococcus phage tp310-1 | 42232 | 33.503 | Staphylococcus | Group I | Peeveelvirus | Peeveelvirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.820 | AAI-based (high-confidence) | temperate | integrase orf_2;cro orf_6;antirepressor orf_10;integrase orf_31 | |||
| NC_009760 | Bacillus phage 0305phi8-36 | 218948 | 41.795 | Bacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus thuringiensis | Complete | High-quality | 100.000 | DTR (high-confidence) | temperate | integrase orf_133;antirepressor orf_166 | |||
| NC_009737 | Bacillus phage 1 | 35055 | 44.850 | Bacillus | Group I | Svunavirus | Svunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus sp. 6k512 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_41;antirepressor orf_46 | |||
| NC_009643 | Actinomyces phage Av-1 | 17171 | 49.502 | Actinomyces | Group I | Dybvigvirus | Dybvigvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Actinomyces naeslundii | Complete | High-quality | 100.000 | ITR (medium-confidence) | lytic | ||||
| NC_009604 | Burkholderia phage BcepNY3 | 47382 | 63.640 | Burkholderia | Group I | Naesvirus | Naesvirus | Mascarenevirinae | Anamaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Burkholderia cenocepacia HI2424 | High-quality | High-quality | 98.280 | AAI-based (high-confidence) | lytic | ||||
| NC_009603 | Microbacterium phage Min1 | 46365 | 68.314 | Microbacterium | Group I | Minunavirus | Minunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microbacterium nematophilum | Medium-quality | Genome-fragment | 88.320 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_2;cro orf_3 | |||
| NC_009597 | Pyrococcus abyssi virus 1 | 18098 | 47.160 | Pyrococcus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Pyrococcus abyssi | Not-determined | Genome-fragment | lytic | ||||||
| NC_009554 | Lactobacillus phage LL-H | 34659 | 47.817 | Lactobacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus delbrueckii subsp. lactis strains LKT and ATCC 15808 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_009552 | Geobacillus virus E2 | 40863 | 44.786 | Geobacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Geobacillus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | antirepressor orf_28 | |||
| NC_009551 | Phormidium phage Pf-WMP3 | 43249 | 46.480 | Phormidium | Group I | Wumptrevirus | Wumptrevirus | Unclassified | Saffermanviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Leptolyngbya foveolarum | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic |