INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_011287 | Mycobacterium phage Pacc40 | 58554 | 61.263 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_37;immunity orf_39 | |||
| NC_011285 | Mycobacterium phage Troll4 | 64618 | 59.612 | Mycobacterium | Group I | Plotvirus | Plotvirus | Dclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 97.990 | AAI-based (high-confidence) | lytic | ||||
| NC_011273 | Mycobacterium phage Myrna | 164602 | 65.436 | Mycobacterium | Group I | Myrnavirus | Myrnavirus | Ceeclamvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_011272 | Mycobacterium phage Rizal | 153894 | 64.743 | Mycobacterium | Group I | Bixzunavirus | Bixzunavirus | Ceeclamvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 96.460 | AAI-based (high-confidence) | lytic | ||||
| NC_011271 | Mycobacterium phage Cali | 155372 | 64.720 | Mycobacterium | Group I | Bixzunavirus | Bixzunavirus | Ceeclamvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 97.390 | AAI-based (high-confidence) | lytic | ||||
| NC_011270 | Mycobacterium phage Spud | 154906 | 64.777 | Mycobacterium | Group I | Bixzunavirus | Bixzunavirus | Ceeclamvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 97.100 | AAI-based (high-confidence) | lytic | ||||
| NC_011269 | Mycobacterium phage ScottMcG | 154017 | 64.829 | Mycobacterium | Group I | Bixzunavirus | Bixzunavirus | Ceeclamvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 96.540 | AAI-based (high-confidence) | lytic | ||||
| NC_011267 | Mycobacterium phage Solon | 49487 | 63.843 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium sp. | High-quality | High-quality | 95.300 | AAI-based (high-confidence) | temperate | integrase orf_35;immunity orf_67 | |||
| NC_011222 | Bacteroides phage B40-8 | 44929 | 38.628 | Bacteroides | Group I | Gotuavirus | Gotuavirus | Cardingvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacteroides fragilis HSP40 (ATCC 51477) | High-quality | High-quality | 96.840 | AAI-based (high-confidence) | temperate | antirepressor orf_33;antirepressor orf_38 | |||
| NC_011217 | Sulfolobus spindle-shaped virus 5 | 15330 | 38.480 | Sulfolobus | Unclassified | Alphafusellovirus | Alphafusellovirus | Unclassified | Fuselloviridae | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Sulfolobus islandicus | High-quality | High-quality | 97.790 | AAI-based (high-confidence) | temperate | integrase orf_12 |