INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_011612 | Staphylococcus phage phiSauS-IPLA35 | 45344 | 33.246 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 97.640 | AAI-based (high-confidence) | temperate | integrase orf_1;integrase orf_30 | |||
| NC_011611 | Pseudomonas phage MP38 | 36885 | 64.514 | Pseudomonas | Group I | Casadabanvirus | Casadabanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PA14 | High-quality | High-quality | 97.020 | AAI-based (high-confidence) | temperate | cro orf_1;integrase orf_6 | |||
| NC_011589 | Stenotrophomonas phage S1 | 40287 | 63.691 | Stenotrophomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Stenotrophomonas maltophilia | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_29 | |||
| NC_011551 | Bacteriophage APSE-2 | 39867 | 42.910 | Unspecified | Group I | Sendosyvirus | Sendosyvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Candidatus Hamiltonella defensa | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_29 | |||
| NC_011534 | Kluyvera phage Kvp1 | 39472 | 48.642 | Kluyvera | Group I | Berlinvirus | Berlinvirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Kluyvera cryocrescens | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_011523 | Bacillus phage AP50 | 14398 | 38.651 | Bacillus | Group I | Betatectivirus | Betatectivirus | Unclassified | Tectiviridae | Kalamavirales | Tectiliviricetes | Preplasmiviricota | Bamfordvirae | Varidnaviria | Bacillus anthracis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_011421 | Bacillus phage SPO1 | 132562 | 39.965 | Bacillus | Group I | Okubovirus | Okubovirus | Spounavirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus subtilis | High-quality | High-quality | 90.410 | AAI-based (high-confidence) | lytic | ||||
| NC_011399 | Ralstonia phage RSM3 | 8929 | 59.648 | Ralstonia | Group II | Habenivirus | Habenivirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_011398 | Clostridioides phage phiCD27 | 50930 | 29.327 | Clostridioides | Group I | Colneyvirus | Colneyvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridioides difficile | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | cro orf_44;antirepressor orf_48 | |||
| NC_011373 | Pseudomonas phage PAJU2 | 46872 | 56.264 | Pseudomonas | Group I | Detrevirus | Detrevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_32 |