INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_013647 | Klebsiella phage KP32 | 41119 | 52.370 | Klebsiella | Group I | Przondovirus | Przondovirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_013646 | Enterococcus phage phiFL1A | 38764 | 34.014 | Enterococcus | Group I | Phifelvirus | Phifelvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis | High-quality | High-quality | 93.470 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_3;antirepressor orf_8 | |||
| NC_013645 | Streptococcus phage Abc2 | 34882 | 38.986 | Streptococcus | Group I | Moineauvirus | Moineauvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus thermophilus | High-quality | High-quality | 94.690 | AAI-based (high-confidence) | temperate | antirepressor orf_25 | |||
| NC_013644 | Enterococcus phage phiFL4A | 37856 | 37.777 | Enterococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_4;cro orf_5 | |||
| NC_013643 | Enterococcus phage phiFL2A | 36270 | 34.607 | Enterococcus | Group I | Phifelvirus | Phifelvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis | Medium-quality | Genome-fragment | 87.510 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_3;antirepressor orf_8;cro orf_43 | |||
| NC_013638 | Pseudomonas phage phi2 | 43144 | 58.914 | Pseudomonas | Group I | Tunggulvirus | Tunggulvirus | Unclassified | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas fluorescens SBW25 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | antirepressor orf_30 | |||
| NC_013600 | Sodalis phage SO-1 | 45169 | 54.582 | Sodalis | Group I | Dhillonvirus | Dhillonvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Sodalis glossinidius | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_013599 | Xylella phage Xfas53 | 36674 | 56.757 | Xylella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Xylella fastidiosa | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_1 | |||
| NC_013598 | Streptococcus phage ALQ13.2 | 35525 | 39.395 | Streptococcus | Group I | Brussowvirus | Brussowvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus thermophilus | High-quality | High-quality | 93.190 | AAI-based (high-confidence) | temperate | cro orf_29;cro orf_31 | |||
| NC_013597 | Aggregatibacter phage S1249 | 43970 | 42.443 | Aggregatibacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Aggregatibacter actinomycetemcomitans D11S-1 | Complete | High-quality | 100.000 | DTR (high-confidence) | temperate | antirepressor orf_50;integrase orf_60 |