INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_016763 | Salmonella phage SE2 | 43221 | 49.645 | Salmonella | Group I | Jerseyvirus | Jerseyvirus | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica serovar Enteritidis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_016762 | Pseudomonas phage phi297 | 49135 | 62.147 | Pseudomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_65 | |||
| NC_016761 | Salmonella phage SPN1S | 38684 | 50.163 | Salmonella | Group I | Uetakevirus | Uetakevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | pathenogenic Salmonella bacterium | High-quality | High-quality | 96.900 | AAI-based (high-confidence) | temperate | integrase orf_29 | |||
| NC_016659 | Cyanophage NATL2A-133 | 47536 | 39.871 | Prochlorococcus | Group I | Tangaroavirus | Tangaroavirus | Sechaudvirinae | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Prochlorococcus sp. NATL2A | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_016658 | Cyanophage NATL1A-7 | 47741 | 38.732 | Prochlorococcus | Group I | Cheungvirus | Cheungvirus | Sechaudvirinae | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Prochlorococcus sp. NATL1A | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_22 | |||
| NC_016657 | Cyanophage 9515-10a | 47055 | 39.197 | Prochlorococcus | Group I | Tangaroavirus | Tangaroavirus | Sechaudvirinae | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Prochlorococcus sp. MIT9515 | High-quality | High-quality | 99.550 | AAI-based (high-confidence) | lytic | ||||
| NC_016656 | Cyanophage P-SSP2 | 45890 | 37.932 | Prochlorococcus | Group I | Tritonvirus | Tritonvirus | Sechaudvirinae | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH8017 | High-quality | High-quality | 99.450 | AAI-based (high-confidence) | lytic | ||||
| NC_016655 | Rhodococcus phage REQ1 | 51342 | 66.324 | Rhodococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhodococcus equi | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_016654 | Rhodococcus phage REQ3 | 39474 | 65.950 | Rhodococcus | Group I | Wodongavirus | Wodongavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhodococcus equi | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_1 | |||
| NC_016653 | Rhodococcus phage RER2 | 46586 | 58.571 | Rhodococcus | Group I | Rerduovirus | Rerduovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhodococcus erythropolis | High-quality | High-quality | 99.000 | AAI-based (high-confidence) | temperate | integrase orf_22;immunity orf_51 |