INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_017980 | Clostridium phage phiCP7R | 18397 | 34.810 | Clostridium | Group I | Brucesealvirus | Brucesealvirus | Unclassified | Guelinviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium perfringens | Complete | High-quality | 100.000 | ITR (high-confidence) | lytic | ||||
| NC_017978 | Clostridium phage PhiS63 | 33609 | 27.478 | Clostridium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium perfringens strain S63 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_26 | |||
| NC_017976 | Bacillus phage PBC1 | 41164 | 41.684 | Bacillus | Group I | Pebcunavirus | Pebcunavirus | Gutmannvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus cereus | High-quality | High-quality | 98.820 | AAI-based (high-confidence) | lytic | ||||
| NC_017975 | Halocynthia phage JM-2012 | 167292 | 35.395 | Unspecified | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Medium-quality | Genome-fragment | 60.540 | AAI-based (medium-confidence) | lytic | ||||
| NC_017974 | Cronobacter phage CR3 | 149273 | 50.948 | Cronobacter | Group I | Certrevirus | Certrevirus | Vequintavirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cronobacter sakazakii | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_017973 | Mycobacterium phage SWU1 | 52474 | 62.406 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.940 | AAI-based (high-confidence) | temperate | integrase orf_29;immunity orf_71 | |||
| NC_017972 | Pseudomonas phage Lu11 | 280538 | 50.883 | Pseudomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas putida var. Manila | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_127 | |||
| NC_017971 | Pseudomonas phage tf | 46271 | 53.202 | Pseudomonas | Group I | Krylovvirus | Krylovvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas putida PpG1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_017969 | Escherichia phage vB_EcoS_AKFV33 | 108853 | 38.945 | Escherichia | Group I | Tequintavirus | Tequintavirus | Markadamsvirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 96.330 | AAI-based (high-confidence) | lytic | ||||
| NC_017968 | Staphylococcus phage TEM123 | 43786 | 34.036 | Staphylococcus | Group I | Dubowvirus | Dubowvirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | antirepressor orf_10;cro orf_11;cro orf_12;integrase orf_16;integrase orf_49 |