INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_018277 | Staphylococcus phage SpaA1 | 42784 | 35.635 | Staphylococcus | Group I | Beceayunavirus | Beceayunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus pasteuri | High-quality | High-quality | 96.520 | AAI-based (high-confidence) | temperate | integrase orf_20;integrase orf_31;antirepressor orf_39 | |||
| NC_018276 | Croceibacter phage P2559S | 44988 | 41.853 | Croceibacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Croceibacter atlanticus HTCC2559 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_018275 | Salmonella phage vB_SemP_Emek | 39783 | 47.651 | Salmonella | Group I | Lederbergvirus | Lederbergvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella serovar Haardt | High-quality | High-quality | 97.060 | AAI-based (high-confidence) | temperate | antirepressor orf_23;integrase orf_25;integrase orf_40;cro orf_44 | |||
| NC_018274 | Pseudomonas phage MP42 | 36847 | 64.198 | Pseudomonas | Group I | Casadabanvirus | Casadabanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PA14 | High-quality | High-quality | 96.870 | AAI-based (high-confidence) | temperate | cro orf_1;integrase orf_6 | |||
| NC_018273 | Leuconostoc phage Lmd1 | 26201 | 36.403 | Leuconostoc | Group I | Limdunavirus | Limdunavirus | Mccleskeyvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Leuconostoc mesenteroides subsp. dextranicum A1 (LMGT 3752) | High-quality | High-quality | 97.620 | AAI-based (high-confidence) | lytic | ||||
| NC_018272 | Nonlabens phage P12024L | 35652 | 35.875 | Nonlabens | Group I | Inhavirus | Inhavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Persicivirga sp. IMCC12024 | High-quality | High-quality | 99.870 | AAI-based (high-confidence) | lytic | ||||
| NC_018271 | Nonlabens phage P12024S | 35700 | 35.535 | Nonlabens | Group I | Inhavirus | Inhavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Persicivirga sp. IMCC12024 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_018270 | Weissella phage phiYS61 | 33594 | 43.919 | Weissella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Weissella cibaria YS61 | Complete | High-quality | 100.000 | ITR (high-confidence) | lytic | ||||
| NC_018269 | Marinomonas phage P12026 | 31766 | 46.603 | Marinomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Marinomonas sp. IMCC12026 | High-quality | High-quality | 98.010 | AAI-based (high-confidence) | lytic | ||||
| NC_018264 | Thermoanaerobacterium phage THSA-485A | 41938 | 36.771 | Thermoanaerobacterium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Thermoanaerobacterium saccharolyticum JW/SL-YS485 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic |