INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_019420 | Edwardsiella phage KF-1 | 41549 | 48.276 | Edwardsiella | Group I | Kafunavirus | Kafunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.680 | AAI-based (high-confidence) | lytic | ||||
| NC_019419 | Escherichia phage JL1 | 43457 | 54.774 | Escherichia | Group I | Dhillonvirus | Dhillonvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7 | High-quality | High-quality | 97.170 | AAI-based (high-confidence) | lytic | ||||
| NC_019418 | Streptococcus phage phiNJ2 | 37282 | 39.418 | Streptococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus suis NJ2 serotype 9 | High-quality | High-quality | 96.660 | AAI-based (high-confidence) | lytic | ||||
| NC_019417 | Salmonella phage SPN19 | 59203 | 56.524 | Salmonella | Group I | Chivirus | Chivirus | Unclassified | Casjensviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella sp. | High-quality | High-quality | 91.850 | AAI-based (high-confidence) | temperate | integrase orf_13 | |||
| NC_019416 | Stenotrophomonas phage IME15 | 38513 | 53.652 | Stenotrophomonas | Group I | Ebriosvirus | Ebriosvirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Stenotrophomonas maltophilia | High-quality | High-quality | 96.460 | AAI-based (high-confidence) | lytic | ||||
| NC_019414 | Streptomyces phage R4 | 51071 | 66.962 | Streptomyces | Group I | Arequatrovirus | Arequatrovirus | Arquatrovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces coelicolor A3(2) | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | immunity orf_28;integrase orf_50 | |||
| NC_019413 | Sulfolobales Mexican rudivirus 1 | 27431 | 46.597 | Unspecified | Group I | Icerudivirus | Icerudivirus | Unclassified | Rudiviridae | Ligamenvirales | Tokiviricetes | Taleaviricota | Zilligvirae | Adnaviria | Unspecified | Complete | High-quality | 100.000 | ITR (medium-confidence) | lytic | ||||
| NC_019411 | Caulobacter phage CcrSwift | 219216 | 66.073 | Caulobacter | Group I | Shapirovirus | Shapirovirus | Unclassified | Jeanschmidtviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Caulobacter vibrioides | Complete | High-quality | 100.000 | DTR (high-confidence) | temperate | integrase orf_137;integrase orf_186;cro orf_218 | |||
| NC_019410 | Caulobacter virus Karma | 221828 | 66.207 | Caulobacter | Group I | Shapirovirus | Shapirovirus | Unclassified | Jeanschmidtviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Caulobacter crescentus | Complete | High-quality | 100.000 | DTR (high-confidence) | temperate | integrase orf_9;integrase orf_141;integrase orf_191;cro orf_223;integrase orf_336 | |||
| NC_019408 | Caulobacter phage CcrRogue | 223720 | 66.105 | Caulobacter | Group I | Poindextervirus | Poindextervirus | Unclassified | Jeanschmidtviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Caulobacter vibrioides | Complete | High-quality | 100.000 | DTR (high-confidence) | temperate | integrase orf_136 |