INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_019706 | Enterobacteria phage mEp043 c-1 | 42780 | 50.790 | Enterobacteria | Group I | Aguilavirus | Aguilavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 98.570 | AAI-based (high-confidence) | temperate | integrase orf_24;antirepressor orf_46 | |||
| NC_019705 | Escherichia phage mEpX2 | 38759 | 50.076 | Escherichia | Group I | Shamshuipovirus | Shamshuipovirus | Hendrixvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 97.640 | AAI-based (high-confidence) | temperate | integrase orf_25;cro orf_40;antirepressor orf_41 | |||
| NC_019704 | Enterobacteria phage mEp237 | 44375 | 51.432 | Enterobacteria | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 98.410 | AAI-based (high-confidence) | temperate | integrase orf_28;antirepressor orf_40 | |||
| NC_019550 | Liberibacter phage SC2 | 38997 | 39.377 | Liberibacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Candidatus Liberibacter asiaticus UF506 | High-quality | High-quality | 99.110 | AAI-based (high-confidence) | temperate | antirepressor orf_32 | |||
| NC_019549 | Liberibacter phage SC1 | 40048 | 41.196 | Liberibacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Candidatus Liberibacter asiaticus UF506 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | antirepressor orf_32 | |||
| NC_019548 | Ralstonia phage RSS0 | 7288 | 62.047 | Ralstonia | Group II | Restivirus | Restivirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Ralstonia solanacearum | High-quality | High-quality | 93.140 | AAI-based (high-confidence) | lytic | ||||
| NC_019545 | Salmonella phage SPN3UB | 47355 | 49.613 | Salmonella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella typhimurium | High-quality | High-quality | 97.570 | AAI-based (high-confidence) | temperate | integrase orf_38;cro orf_48 | |||
| NC_019544 | Deep-sea thermophilic phage D6E | 49335 | 45.998 | Unspecified | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | cro orf_40 | |||
| NC_019543 | Aeromonas phage Aes508 | 160646 | 41.227 | Aeromonas | Group I | Tulanevirus | Tulanevirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Aeromonas salmonicida | High-quality | High-quality | 94.920 | AAI-based (high-confidence) | lytic | ||||
| NC_019542 | Pectobacterium phage PP1 | 44400 | 49.736 | Pectobacterium | Group I | Axomammavirus | Axomammavirus | Molineuxvirinae | Autosignataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.590 | AAI-based (high-confidence) | lytic |