INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_019914 | Staphylococcus phage StB27 | 40071 | 33.216 | Staphylococcus | Group I | Azeredovirinae | Unclassified | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus hominis | High-quality | High-quality | 98.690 | AAI-based (high-confidence) | temperate | integrase orf_1;antirepressor orf_6 | |||
| NC_019913 | Pseudomonas phage PaP1 | 91715 | 49.362 | Pseudomonas | Group I | Pakpunavirus | Pakpunavirus | Skurskavirinae | Vandenendeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PA1 | High-quality | High-quality | 98.620 | AAI-based (high-confidence) | lytic | ||||
| NC_019912 | Bacillus phage vB_BtS_BMBtp2 | 36932 | 37.788 | Bacillus | Group I | Lwoffvirus | Lwoffvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus thuringiensis subsp. tenebrionis YBT-1765 | High-quality | High-quality | 93.460 | AAI-based (high-confidence) | temperate | antirepressor orf_18 | |||
| NC_019911 | Yersinia phage phi80-18 | 42406 | 47.637 | Yersinia | Group I | Pokrovskaiavirus | Pokrovskaiavirus | Melnykvirinae | Autonotataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_019910 | Salmonella phage SKML-39 | 159624 | 50.154 | Salmonella | Group I | Agtrevirus | Agtrevirus | Aglimvirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_019909 | Yersinia phage phiR1-RT | 168809 | 34.544 | Yersinia | Group I | Tegunavirus | Tegunavirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Yersinia enterocolitica | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_019813 | Pseudomonas phage vB_PaeP_p2-10_Or1 | 44030 | 51.994 | Pseudomonas | Group I | Bruynoghevirus | Bruynoghevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 97.150 | AAI-based (high-confidence) | lytic | ||||
| NC_019782 | Lactobacillus phage phiAQ113 | 36566 | 36.520 | Lactobacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | antirepressor orf_41 | |||
| NC_019769 | Escherichia phage HK542 | 38964 | 50.914 | Escherichia | Group I | Wongtaivirus | Wongtaivirus | Hendrixvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 97.630 | AAI-based (high-confidence) | temperate | integrase orf_23;cro orf_35;cro orf_36 | |||
| NC_019768 | Escherichia phage HK106 | 41468 | 49.342 | Escherichia | Group I | Wanchaivirus | Wanchaivirus | Hendrixvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_25;cro orf_43;antirepressor orf_44 |