INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_019934 | Cronobacter phage ENT39118 | 39012 | 53.063 | Cronobacter | Group I | Hendrixvirinae | Unclassified | Hendrixvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cronobacter sakazakii | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | cro orf_39;antirepressor orf_46;integrase orf_49 | |||
| NC_019933 | Xanthomonas phage CP1 | 43870 | 53.310 | Xanthomonas | Group I | Klementvirus | Klementvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Xanthomonas citri | High-quality | High-quality | 99.830 | AAI-based (high-confidence) | temperate | integrase orf_41 | |||
| NC_019932 | Erwinia phage ENT90 | 29564 | 55.811 | Erwinia | Group I | Entnonagintavirus | Entnonagintavirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Erwinia amylovora | High-quality | High-quality | 95.890 | AAI-based (high-confidence) | temperate | cro orf_28;integrase orf_29 | |||
| NC_019931 | Helicobacter phage KHP40 | 26449 | 35.941 | Helicobacter | Group I | Schmidvirus | Schmidvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Helicobacter pylori strain KMT83 | High-quality | High-quality | 92.050 | AAI-based (high-confidence) | temperate | integrase orf_2 | |||
| NC_019930 | Tetrasphaera phage TJE1 | 49219 | 57.742 | Tetrasphaera | Group I | Tijeunavirus | Tijeunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Tetrasphaera jenkinsii | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_019929 | Erwinia phage phiEaH2 | 243050 | 51.290 | Erwinia | Group I | Erskinevirus | Erskinevirus | Unclassified | Chimalliviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Erwinia amylovora | High-quality | High-quality | 98.850 | AAI-based (high-confidence) | lytic | ||||
| NC_019928 | Helicobacter phage KHP30 | 26215 | 35.770 | Helicobacter | Group I | Schmidvirus | Schmidvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Helicobacter pylori strain 3401 | High-quality | High-quality | 91.400 | AAI-based (high-confidence) | temperate | integrase orf_2;cro orf_18 | |||
| NC_019927 | Cronobacter phage ENT47670 | 47611 | 51.593 | Cronobacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cronobacter sakazakii | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_6;cro orf_14;antirepressor orf_52;cro orf_53 | |||
| NC_019926 | Erwinia phage phiEa100 | 45554 | 49.677 | Erwinia | Group I | Eracentumvirus | Eracentumvirus | Molineuxvirinae | Autosignataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.610 | AAI-based (high-confidence) | lytic | ||||
| NC_019925 | Dickeya phage vB-DsoM-LIMEstone1 | 152427 | 49.279 | Dickeya | Group I | Limestonevirus | Limestonevirus | Aglimvirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Dickeya solani | High-quality | High-quality | 96.530 | AAI-based (high-confidence) | lytic |