INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_020414 | Escherichia phage UAB_Phi78 | 43984 | 47.449 | Escherichia | Group I | Zindervirus | Zindervirus | Molineuxvirinae | Autosignataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhimurium | High-quality | High-quality | 98.690 | AAI-based (high-confidence) | lytic | ||||
| NC_020205 | Xanthomonas citri phage CP2 | 42963 | 67.018 | Xanthomonas | Group I | Tabiovirus | Tabiovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Xanthomonas citri | High-quality | High-quality | 99.130 | AAI-based (high-confidence) | lytic | ||||
| NC_020204 | Klebsiella phage JD001 | 48814 | 48.535 | Klebsiella | Group I | Jedunavirus | Jedunavirus | Jameshumphriesvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae JDM777 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | antirepressor orf_31 | |||
| NC_020203 | Pseudomonas phage JBD24 | 37095 | 64.240 | Pseudomonas | Group I | Casadabanvirus | Casadabanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 97.500 | AAI-based (high-confidence) | temperate | cro orf_1 | |||
| NC_020202 | Pseudomonas phage JBD5 | 37740 | 64.269 | Pseudomonas | Group I | Casadabanvirus | Casadabanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 98.490 | AAI-based (high-confidence) | temperate | cro orf_1 | |||
| NC_020201 | Pectobacterium phage phiTE | 142349 | 50.137 | Pectobacterium | Group I | Certrevirus | Certrevirus | Vequintavirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pectobacterium atrosepticum SCRI1043 | High-quality | High-quality | 97.390 | AAI-based (high-confidence) | lytic | ||||
| NC_020200 | Pseudomonas phage JBD88a | 36429 | 63.985 | Pseudomonas | Group I | Casadabanvirus | Casadabanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 95.560 | AAI-based (high-confidence) | temperate | cro orf_1 | |||
| NC_020199 | Staphylococcus phage phi7401PVL | 47252 | 33.044 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_3;integrase orf_4;cro orf_10;integrase orf_33 | |||
| NC_020198 | Pseudomonas phage JBD30 | 36947 | 64.276 | Pseudomonas | Group I | Casadabanvirus | Casadabanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 97.150 | AAI-based (high-confidence) | temperate | cro orf_1;integrase orf_6 | |||
| NC_020197 | Streptococcus phage TP-J34 | 45606 | 38.819 | Streptococcus | Group I | Brussowvirus | Brussowvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus thermophilus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_3;antirepressor orf_6 |