Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
PX438601Acinetobacter phage HZ_NZ3977339.567AcinetobacterUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Acinetobacter baumannii AB-ZAJM6High-qualityHigh-quality96.010AAI-based (high-confidence) FriunavirusFriunavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PX438058Pseudomonas phage Faith7247754.754PseudomonasGroup I LitunavirusLitunavirusMigulavirinaeSchitoviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas aeruginosa AH17C018 (clinical strain)CompleteHigh-quality100.000DTR (high-confidence) LitunavirusLitunavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PX437956Klebsiella phage KpnB12802257.687KlebsiellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Klebsiella pneumoniae NCTC 13442Low-qualityGenome-fragment10.290HMM-based (lower-bound) New_genusNew_speciesNo hits were found with the default settingslytic
PX437955Klebsiella phage KpnB13933346.320KlebsiellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Klebsiella pneumoniae NCTC 13442Low-qualityGenome-fragment14.600AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancelytic
PX437954Klebsiella phage KpnB17226446.662KlebsiellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Klebsiella pneumoniae NCTC 13442Low-qualityGenome-fragment26.830AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancelytic
PX437953Klebsiella phage KpnB111080445.332KlebsiellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Klebsiella pneumoniae NCTC 13442Low-qualityGenome-fragment41.140AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancelytic
PX437822Aeromonas phage PLH333894153.471AeromonasGroup I TeseptimavirusTeseptimavirusStudiervirinaeAutotranscriptaviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Aeromonas jandaei H33CompleteHigh-quality100.000DTR (high-confidence) EbriosvirusEbriosvirus IME15Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PX437821Aeromonas phage K5S3908953.521AeromonasGroup I TeseptimavirusTeseptimavirusStudiervirinaeAutotranscriptaviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Aeromonas jandaei H33High-qualityHigh-quality97.900AAI-based (medium-confidence) EbriosvirusEbriosvirus IME15Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PX437820Aeromonas phage HPR6468953.538AeromonasGroup I TeseptimavirusTeseptimavirusStudiervirinaeAutotranscriptaviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Aeromonas jandaei H33High-qualityHigh-quality100.000AAI-based (high-confidence) EbriosvirusEbriosvirus IME15The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
PX437819Aeromonas phage HPK5957154.513AeromonasGroup I TeseptimavirusTeseptimavirusStudiervirinaeAutotranscriptaviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Aeromonas jandaei H33High-qualityHigh-quality100.000AAI-based (high-confidence) EbriosvirusEbriosvirus IME15Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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