INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_023553 | Mycobacterium phage Echild | 53159 | 63.690 | Mycobacterium | Group I | Turbidovirus | Turbidovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | parA orf_32;immunity orf_71 | |||
| NC_023552 | Mycobacterium phage Donovan | 47162 | 67.181 | Mycobacterium | Group I | Fishburnevirus | Fishburnevirus | Pclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 96.270 | AAI-based (high-confidence) | temperate | integrase orf_30;immunity orf_31;antirepressor orf_34 | |||
| NC_023551 | Enterococcus phage IME-EF4 | 40692 | 34.624 | Enterococcus | Group I | Efquatrovirus | Efquatrovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus sp. | High-quality | High-quality | 99.830 | AAI-based (high-confidence) | lytic | ||||
| NC_023550 | Staphylococcus phage GRCS | 17869 | 28.899 | Staphylococcus | Group I | Rosenblumvirus | Rosenblumvirus | Rakietenvirinae | Rountreeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus NRS382 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_023549 | Clavibacter phage CN1A | 56789 | 62.088 | Clavibacter | Group I | Cinunavirus | Cinunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clavibacter michiganensis CN18-4 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_023548 | Citrobacter phage CR8 | 39651 | 49.681 | Citrobacter | Group I | Caroctavirus | Caroctavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Citrobacter rodentium | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_023503 | Streptococcus phage 20617 | 48800 | 39.975 | Streptococcus | Group I | Brussowvirus | Brussowvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus thermophilus DSM 20617 | Complete | High-quality | 100.000 | Provirus (high-confidence) | temperate | integrase orf_4;cro orf_6;cro orf_7;cro orf_8 | |||
| NC_023502 | Rhizobium phage vB_RleS_L338C | 109558 | 59.003 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium leguminosarum biovar viciae 3841 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_023501 | Bacillus phage BPS10C | 159590 | 38.742 | Bacillus | Group I | Wphvirus | Wphvirus | Bastillevirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.690 | AAI-based (high-confidence) | lytic | ||||
| NC_023500 | Staphylococcus phage StauST398-5 | 43301 | 35.135 | Staphylococcus | Group I | Phietavirus | Phietavirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_2;cro orf_5;antirepressor orf_10;integrase orf_35 |