INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_023583 | Pseudomonas phage TL | 45696 | 52.366 | Pseudomonas | Group I | Bruynoghevirus | Bruynoghevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_023582 | Staphylococcus phage vB_SepS_SEP9 | 92417 | 29.568 | Staphylococcus | Group I | Sextaecvirus | Sextaecvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus epidermidis strain M129 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_37 | |||
| NC_023581 | Acinetobacter phage Presley | 77792 | 37.766 | Acinetobacter | Group I | Presleyvirus | Presleyvirus | Unclassified | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii M2 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_023580 | Mycobacterium phage Saal | 57775 | 61.289 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_42;immunity orf_46;antirepressor orf_48 | |||
| NC_023579 | Erwinia phage Ea9-2 | 75568 | 47.041 | Erwinia | Group I | Johnsonvirus | Johnsonvirus | Erskinevirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Erwinia amylovora strain Ea17-1-1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_023578 | Mycobacterium phage Oaker | 69099 | 57.546 | Mycobacterium | Group I | Konstantinevirus | Konstantinevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.460 | AAI-based (high-confidence) | lytic | ||||
| NC_023577 | Mycobacterium phage Obama12 | 51797 | 63.963 | Mycobacterium | Group I | Backyardiganvirus | Backyardiganvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_31;immunity orf_64 | |||
| NC_023576 | Citrobacter phage CR44b | 39207 | 50.491 | Citrobacter | Group I | Kayfunavirus | Kayfunavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Citrobacter rodentium | High-quality | High-quality | 98.560 | AAI-based (high-confidence) | lytic | ||||
| NC_023575 | Pseudomonas phage vB_PaeP_Tr60_Ab31 | 45550 | 57.104 | Pseudomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_19 | |||
| NC_023574 | Lactococcus phage phiL47 | 128546 | 32.532 | Lactococcus | Group I | Audreyjarvisvirus | Audreyjarvisvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis subsp. cremoris DPC6860 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_169 |