INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_025434 | Shigella phage POCJ13 | 62699 | 49.347 | Shigella | Group I | Diegovirus | Diegovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella flexneri 2a | High-quality | High-quality | 95.490 | AAI-based (high-confidence) | temperate | integrase orf_1;antirepressor orf_26;antirepressor orf_44;antirepressor orf_75;antirepressor orf_76 | |||
| NC_025433 | Mycobacterium phage Taj | 58550 | 61.863 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_44;immunity orf_46 | |||
| NC_025431 | Mesorhizobium phage vB_MloP_Lo5R7ANS | 45718 | 61.053 | Mesorhizobium | Group I | Pairvirus | Pairvirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mesorhizobium loti R7ANS | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_13 | |||
| NC_025430 | Escherichia phage vB_EcoM-ep3 | 42351 | 53.347 | Escherichia | Group I | Jilinvirus | Jilinvirus | Iiscvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_025429 | Rhizobium phage vB_RleM_P10VF | 156446 | 49.877 | Rhizobium | Group I | Innesvirus | Innesvirus | Unclassified | Pootjesviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium leguminosarum biovar viciae VF39 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_025428 | Ruegeria phage DSS3-P1 | 59601 | 64.133 | Ruegeria | Group I | Casjensviridae | Unclassified | Unclassified | Casjensviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Ruegeria pomeroyi DSS-3 | High-quality | High-quality | 97.100 | AAI-based (high-confidence) | temperate | integrase orf_68 | |||
| NC_025427 | Rhizobium phage vB_RleM_PPF1 | 54506 | 61.900 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium leguminosarum strain F1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_41 | |||
| NC_025426 | Staphylococcus phage P108 | 140807 | 30.217 | Staphylococcus | Group I | Kayvirus | Kayvirus | Twortvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus XN108 | High-quality | High-quality | 99.450 | AAI-based (high-confidence) | lytic | ||||
| NC_025425 | Enterobacteria phage GEC-3S | 163424 | 40.549 | Enterobacteria | Group I | Krischvirus | Krischvirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O104:H4 | High-quality | High-quality | 98.090 | AAI-based (high-confidence) | lytic | ||||
| NC_025424 | Bacillus phage Waukesha92 | 45648 | 35.452 | Bacillus | Group I | Waukeshavirus | Waukeshavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus thuringiensis subsp. Kurstaki | High-quality | High-quality | 99.300 | AAI-based (high-confidence) | temperate | antirepressor orf_31;integrase orf_50 |