INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_028782 | Bacillus phage Pavlov | 40024 | 40.621 | Bacillus | Group I | Pagevirus | Pagevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus megaterium | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_028780 | Escherichia phage slur07 | 167124 | 35.429 | Escherichia | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_028779 | Mycobacterium phage Carcharodon | 43680 | 66.241 | Mycobacterium | Group I | Charlievirus | Charlievirus | Nclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_36;immunity orf_37 | |||
| NC_028778 | Mycobacterium phage Snenia | 75626 | 59.276 | Mycobacterium | Group I | Lumosvirus | Lumosvirus | Lclasvirinae | Vilmaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.480 | AAI-based (high-confidence) | temperate | integrase orf_35;immunity orf_37 | |||
| NC_028777 | Bacillus phage Stills | 80798 | 35.481 | Bacillus | Group I | Slashvirus | Slashvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus megaterium Km Sp- | Complete | High-quality | 100.000 | DTR (high-confidence) | temperate | antirepressor orf_97 | |||
| NC_028776 | Escherichia phage CAjan | 59670 | 44.708 | Escherichia | Group I | Seuratvirus | Seuratvirus | Queuovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli K-12 subsr. MG1655 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_028775 | Staphylococcus phage 23MRA | 43098 | 32.902 | Staphylococcus | Group I | Biseptimavirus | Biseptimavirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_4;antirepressor orf_28;cro orf_32;integrase orf_37 | |||
| NC_028774 | Klebsiella phage Sushi | 48754 | 50.769 | Klebsiella | Group I | Webervirus | Webervirus | Unclassified | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | High-quality | High-quality | 98.410 | AAI-based (high-confidence) | lytic | ||||
| NC_028773 | Cronobacter phage S13 | 182145 | 40.199 | Cronobacter | Group I | Straboviridae | Unclassified | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cronobacter sakazakii ATCC 29544 | High-quality | High-quality | 99.510 | AAI-based (high-confidence) | lytic | ||||
| NC_028772 | Enterobacter phage phiEap-1 | 39133 | 51.688 | Enterobacter | Group I | Eapunavirus | Eapunavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterobacter aerogenes | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic |