INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_028841 | Bacteriophage Lily | 44952 | 42.730 | Unspecified | Group I | Lilyvirus | Lilyvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae ATCC 9545 | High-quality | High-quality | 99.480 | AAI-based (high-confidence) | temperate | antirepressor orf_47;integrase orf_69 | |||
| NC_028840 | Escherichia phage slur09 | 111751 | 39.015 | Escherichia | Group I | Tequintavirus | Tequintavirus | Markadamsvirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_028838 | Clostridium phage phiCD506 | 33274 | 29.612 | Clostridium | Group I | Sherbrookevirus | Sherbrookevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium difficile | High-quality | High-quality | 97.590 | AAI-based (high-confidence) | temperate | parA orf_34;integrase orf_48 | |||
| NC_028837 | Paenibacillus phage Xenia | 41149 | 41.525 | Paenibacillus | Group I | Fernvirus | Fernvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae NRRL 2605 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | antirepressor orf_32;antirepressor orf_36;antirepressor orf_40;integrase orf_59 | |||
| NC_028836 | Pseudomonas phage DL62 | 42508 | 62.195 | Pseudomonas | Group I | Phikmvvirus | Phikmvvirus | Krylovirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PAO1 | High-quality | High-quality | 98.710 | AAI-based (high-confidence) | lytic | ||||
| NC_028835 | Lactobacillus phage CL2 | 38751 | 44.879 | Lactobacillus | Group I | Colunavirus | Colunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus paracasei | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_23;antirepressor orf_29;antirepressor orf_32;cro orf_52 | |||
| NC_028834 | Achromobacter phage 83-24 | 48216 | 54.853 | Achromobacter | Group I | Amaduovirus | Amaduovirus | Alvaradovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Achromobacter xylosoxidans | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_028832 | Mycobacterium phage Omnicron | 61511 | 64.034 | Mycobacterium | Group I | Kratiovirus | Kratiovirus | Weiservirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.200 | AAI-based (high-confidence) | temperate | integrase orf_38;immunity orf_40 | |||
| NC_028831 | Escherichia phage slur01 | 61235 | 44.429 | Escherichia | Group I | Seuratvirus | Seuratvirus | Queuovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_028830 | Lactobacillus phage iA2 | 34155 | 45.639 | Lactobacillus | Group I | Iaduovirus | Iaduovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus paracasei | High-quality | High-quality | 99.070 | AAI-based (high-confidence) | temperate | antirepressor orf_30 |