INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_028863 | Escherichia phage P694 | 40477 | 48.420 | Escherichia | Group I | Berlinvirus | Berlinvirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli DE69 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_028862 | Staphylococcus phage vB_SauS_phi2 | 44222 | 33.716 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 95.390 | AAI-based (high-confidence) | temperate | integrase orf_27;integrase orf_54 | |||
| NC_028861 | Mycobacterium phage FlagStaff | 44576 | 68.521 | Mycobacterium | Group I | Avocadovirus | Avocadovirus | Gclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.500 | AAI-based (high-confidence) | lytic | ||||
| NC_028860 | Mycobacterium phage Smeadley | 52392 | 61.414 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_28;immunity orf_79 | |||
| NC_028859 | Staphylococcus phage B166 | 42881 | 34.829 | Staphylococcus | Group I | Phietavirus | Phietavirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus NRL 09/166 | High-quality | High-quality | 99.890 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_4;cro orf_5;antirepressor orf_6;integrase orf_33 | |||
| NC_028857 | Citrobacter phage Merlin | 172733 | 38.763 | Citrobacter | Group I | Moonvirus | Moonvirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Citrobacter freundii | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_028856 | Bacillus phage Stahl | 80148 | 35.257 | Bacillus | Group I | Slashvirus | Slashvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus megaterium Km Sp- | Complete | High-quality | 100.000 | DTR (high-confidence) | temperate | antirepressor orf_97 | |||
| NC_028855 | Acinetobacter phage YMC11/12/R2315 | 44846 | 37.600 | Acinetobacter | Group I | Obolenskvirus | Obolenskvirus | Unclassified | Hirszfeldviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter sp. | High-quality | High-quality | 99.840 | AAI-based (high-confidence) | lytic | ||||
| NC_028854 | Paenibacillus phage Sitara | 43724 | 41.593 | Paenibacillus | Group I | Fernvirus | Fernvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae ATCC 25747 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | antirepressor orf_32;integrase orf_33;antirepressor orf_36;antirepressor orf_38;antirepressor orf_42 | |||
| NC_028853 | Mannheimia phage vB_MhS_535AP2 | 50078 | 41.310 | Mannheimia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mannheimia haemolytica 535A serotype A1 | High-quality | High-quality | 98.020 | AAI-based (high-confidence) | temperate | integrase orf_35;cro orf_57;cro orf_58 |