INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_028956 | Mannheimia phage vB_MhS_1152AP2 | 52139 | 41.094 | Mannheimia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mannheimia haemolytica 1152A serotype A6 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_30;antirepressor orf_34;cro orf_56;cro orf_57 | |||
| NC_028955 | Prochlorococcus phage P-TIM68 | 197361 | 34.321 | Prochlorococcus | Group I | Haifavirus | Haifavirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Prochlorococcus sp. MIT9515 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | lytic | ||||
| NC_028954 | Rhodobacter phage RcRhea | 36065 | 65.446 | Rhodobacter | Group I | Cronusvirus | Cronusvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhodobacter capsulatus YW1 | High-quality | High-quality | 99.960 | AAI-based (high-confidence) | lytic | ||||
| NC_028953 | Mycobacterium phage MiaZeal | 110764 | 61.153 | Mycobacterium | Group I | Omegavirus | Omegavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.890 | AAI-based (high-confidence) | temperate | integrase orf_86;immunity orf_190 | |||
| NC_028952 | Streptomyces phage SF3 | 60934 | 69.112 | Streptomyces | Group I | Siftrevirus | Siftrevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces flavovirens | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_36 | |||
| NC_028951 | Clostridium phage phiCD481-1 | 32846 | 30.250 | Clostridium | Group I | Sherbrookevirus | Sherbrookevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium difficile | High-quality | High-quality | 96.180 | AAI-based (high-confidence) | temperate | parA orf_32;cro orf_36;integrase orf_47 | |||
| NC_028950 | Ralstonia phage RSL2 | 223932 | 52.057 | Ralstonia | Group I | Chiangmaivirus | Chiangmaivirus | Unclassified | Chimalliviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.570 | AAI-based (high-confidence) | lytic | ||||
| NC_028947 | Mycobacterium phage Kratio | 62738 | 65.670 | Mycobacterium | Group I | Kratiovirus | Kratiovirus | Weiservirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_36;immunity orf_38 | |||
| NC_028946 | Mycobacterium phage Dante | 59652 | 61.793 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_40;immunity orf_42;antirepressor orf_43 | |||
| NC_028945 | Sinorhizobium phage phiN3 | 206713 | 49.075 | Sinorhizobium | Group I | Emdodecavirus | Emdodecavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Sinorhizobium meliloti | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | cro orf_126 |