INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_029015 | Salmonella phage SEN4 | 33509 | 53.365 | Salmonella | Group I | Senquatrovirus | Senquatrovirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. salamae 200/01 II | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_28;integrase orf_39 | |||
| NC_029014 | Parabacteroides phage YZ-2015b | 5001 | 40.152 | Parabacteroides | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Parabacteroides merdae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | unknown | ||||
| NC_029013 | Citrobacter phage IME-CF2 | 177688 | 43.181 | Citrobacter | Group I | Pseudotevenvirus | Pseudotevenvirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Citrobacter freundii | High-quality | High-quality | 99.770 | AAI-based (high-confidence) | lytic | ||||
| NC_029012 | Parabacteroides phage YZ-2015a | 4623 | 42.808 | Parabacteroides | Group II | Pacdirvirus | Pacdirvirus | Unclassified | Pichoviridae | Gokushovirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Parabacteroides distasonis | High-quality | High-quality | 97.640 | AAI-based (high-confidence) | unknown | ||||
| NC_029011 | Sulfolobus monocaudavirus SMV4 | 51711 | 38.615 | Sulfolobus | Unclassified | Bicaudaviridae | Unclassified | Unclassified | Bicaudaviridae | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Sulfolobus | High-quality | High-quality | 95.700 | AAI-based (high-confidence) | temperate | integrase orf_41 | |||
| NC_029010 | Staphylococcus phage SA97 | 40592 | 34.246 | Staphylococcus | Group I | Dubowvirus | Dubowvirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus RN4220 | High-quality | High-quality | 94.280 | AAI-based (high-confidence) | temperate | integrase orf_12;integrase orf_44;antirepressor orf_51 | |||
| NC_029009 | Enterococcus phage EFDG1 | 147589 | 37.203 | Enterococcus | Group I | Schiekvirus | Schiekvirus | Brockvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis | High-quality | High-quality | 96.730 | AAI-based (high-confidence) | lytic | ||||
| NC_029008 | Bacillus phage phi4J1 | 41486 | 35.889 | Bacillus | Group I | Rockvillevirus | Rockvillevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus thuringiensis 4J1 | High-quality | High-quality | 95.780 | AAI-based (high-confidence) | temperate | integrase orf_23;antirepressor orf_29 | |||
| NC_029007 | Ralstonia phage RSJ5 | 43745 | 60.661 | Ralstonia | Group I | Risjevirus | Risjevirus | Unclassified | Autonotataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Ralstonia solanacearum | High-quality | High-quality | 99.380 | AAI-based (high-confidence) | lytic | ||||
| NC_029006 | Clostridium phage phiCT19406C | 35703 | 29.188 | Clostridium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium tetani ATCC 19406 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_2;cro orf_3;antirepressor orf_6;cro orf_60 |