INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_031025 | Klebsiella phage KpV475 | 42201 | 54.198 | Klebsiella | Group I | Drulisvirus | Drulisvirus | Slopekvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_031024 | Bacillus phage Belinda | 162308 | 38.784 | Bacillus | Group I | Wphvirus | Wphvirus | Bastillevirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus thuringiensis DSM350 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_031023 | Streptococcus phage 9874 | 32649 | 36.617 | Streptococcus | Group I | Piorkowskivirus | Piorkowskivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus thermophilus ST64987 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_031022 | Shigella phage SHSML-45 | 108050 | 38.738 | Shigella | Group I | Tequintavirus | Tequintavirus | Markadamsvirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella sonnei | High-quality | High-quality | 95.580 | AAI-based (high-confidence) | lytic | ||||
| NC_031021 | Salmonella phage MA12 | 41224 | 49.876 | Salmonella | Group I | Jerseyvirus | Jerseyvirus | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica serovar Enteritidis | High-quality | High-quality | 96.150 | AAI-based (high-confidence) | lytic | ||||
| NC_031020 | Morganella phage vB_MmoM_MP1 | 163201 | 34.747 | Morganella | Group I | Gualtarvirus | Gualtarvirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Morganella sp. | High-quality | High-quality | 98.720 | AAI-based (high-confidence) | lytic | ||||
| NC_031019 | Enterobacteria phage UAB_Phi20 | 41809 | 47.241 | Enterobacteria | Group I | Lederbergvirus | Lederbergvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | antirepressor orf_14;cro orf_35;antirepressor orf_36;integrase orf_40;integrase orf_55;cro orf_61 | |||
| NC_031018 | Citrobacter phage SH4 | 39274 | 52.587 | Citrobacter | Group I | Kayfunavirus | Kayfunavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Citrobacter freundii CF3 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_031017 | Lactococcus phage 63301 | 32409 | 35.132 | Lactococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis 3107 | High-quality | High-quality | 95.120 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_2;cro orf_8;antirepressor orf_9 | |||
| NC_031016 | Lactococcus phage PLgT-1 | 40273 | 35.401 | Lactococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus garvieae Lg2 | Complete | High-quality | 100.000 | DTR (high-confidence) | temperate | antirepressor orf_61;integrase orf_67 |