INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_041996 | Serratia phage CHI14 | 171175 | 38.735 | Serratia | Group I | Winklervirus | Winklervirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Serratia sp. ATCC 39006 | High-quality | High-quality | 98.910 | AAI-based (high-confidence) | lytic | ||||
| NC_041995 | Shigella phage vB_SsoS-ISF002 | 50564 | 45.532 | Shigella | Group I | Tunavirus | Tunavirus | Tunavirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella sonnei | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_041994 | Pseudomonas phage Noxifer | 278136 | 53.526 | Pseudomonas | Group I | Noxifervirus | Noxifervirus | Unclassified | Chimalliviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas fluorescens SBW25 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_041993 | Mycobacterium phage Sebata | 155286 | 64.782 | Mycobacterium | Group I | Bixzunavirus | Bixzunavirus | Ceeclamvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 97.350 | AAI-based (high-confidence) | lytic | ||||
| NC_041992 | Salmonella phage wksl3 | 42633 | 49.797 | Salmonella | Group I | Jerseyvirus | Jerseyvirus | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.420 | AAI-based (high-confidence) | lytic | ||||
| NC_041991 | Salmonella phage vB_SenS_AG11 | 41546 | 49.909 | Salmonella | Group I | Jerseyvirus | Jerseyvirus | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enteritidis C417 | High-quality | High-quality | 96.950 | AAI-based (high-confidence) | lytic | ||||
| NC_041990 | Escherichia phage ST0 | 170496 | 37.665 | Escherichia | Group I | Mosigvirus | Mosigvirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli H8 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_041989 | Mycobacterium phage Shauna1 | 59315 | 61.708 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | immunity orf_33;integrase orf_35;immunity orf_37 | |||
| NC_041988 | Mycobacterium phage ShiLan | 59794 | 61.446 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_42;immunity orf_44 | |||
| NC_041987 | Mycobacterium phage SirDuracell | 75973 | 62.922 | Mycobacterium | Group I | Kostyavirus | Kostyavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.820 | AAI-based (high-confidence) | temperate | integrase orf_48;immunity orf_51 |