INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_047832 | Pasteurella phage PHB01 | 37287 | 40.725 | Pasteurella | Group I | Wuhanvirus | Wuhanvirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pasteurella multocida | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_047831 | Pasteurella phage vB_PmuP_PHB02 | 38670 | 40.846 | Pasteurella | Group I | Wuhanvirus | Wuhanvirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pasteurella multocida | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_047830 | Escherichia phage ST32 | 53092 | 44.137 | Escherichia | Group I | Carltongylesvirus | Carltongylesvirus | Cleopatravirinae | Chaseviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli H21 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_047829 | Escherichia phage ST31 | 39693 | 49.989 | Escherichia | Group I | Kayfunavirus | Kayfunavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli ST130 | High-quality | High-quality | 99.780 | AAI-based (high-confidence) | lytic | ||||
| NC_047828 | Escherichia phage vB_EcoS_SH2 | 49088 | 45.475 | Escherichia | Group I | Tunavirus | Tunavirus | Tunavirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli MC1061 | High-quality | High-quality | 98.020 | AAI-based (high-confidence) | temperate | cro orf_59 | |||
| NC_047827 | Pseudomonas phage KNP | 40491 | 57.294 | Pseudomonas | Group I | Ghunavirus | Ghunavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas fluorescens group | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_047826 | Pseudomonas phage WRT | 40214 | 57.420 | Pseudomonas | Group I | Ghunavirus | Ghunavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas fluorescens group | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_047825 | Klebsiella phage KOX1 | 50526 | 51.237 | Klebsiella | Group I | Webervirus | Webervirus | Unclassified | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella oxytoca | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_047824 | Shewanella phage SppYZU05 | 54319 | 50.640 | Shewanella | Group I | Yushanvirus | Yushanvirus | Nefertitivirinae | Chaseviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shewanella putrefaciens | High-quality | High-quality | 99.630 | AAI-based (high-confidence) | lytic | ||||
| NC_047823 | Citrobacter phage CF1 DK-2017 | 50339 | 42.647 | Citrobacter | Group I | Tlsvirus | Tlsvirus | Tempevirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Citrobacter freundii | High-quality | High-quality | 99.970 | AAI-based (high-confidence) | temperate | integrase orf_69 |