INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_048632 | Salmonella phage 35 | 55391 | 56.845 | Salmonella | Group I | Chivirus | Chivirus | Unclassified | Casjensviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella gallinarum | Medium-quality | Genome-fragment | 82.330 | AAI-based (high-confidence) | temperate | integrase orf_43;integrase orf_73 | |||
| NC_048631 | Bacillus phage phi105 | 39318 | 42.673 | Bacillus | Group I | Spizizenvirus | Spizizenvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus subtilis BGSC 1L32 | High-quality | High-quality | 99.590 | AAI-based (high-confidence) | temperate | integrase orf_30;immunity orf_32 | |||
| NC_048630 | Pseudoalteromonas phage HP1 | 45035 | 44.665 | Pseudoalteromonas | Group I | Melvirus | Melvirus | Unclassified | Zobellviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudoalteromonas sp. str. H100 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_048629 | Clostridium phage CpV1 | 16748 | 30.505 | Clostridium | Group I | Capvunavirus | Capvunavirus | Denniswatsonvirinae | Guelinviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium perfringens | Complete | High-quality | 100.000 | ITR (high-confidence) | lytic | ||||
| NC_048628 | Bacillus phage BceA1 | 42932 | 35.663 | Bacillus | Group I | Beceayunavirus | Beceayunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus cereus/thuringiensis group | High-quality | High-quality | 96.840 | AAI-based (high-confidence) | temperate | integrase orf_20;integrase orf_31;antirepressor orf_39 | |||
| NC_048627 | Escherichia phage SP15 | 110964 | 39.134 | Escherichia | Group I | Tequintavirus | Tequintavirus | Markadamsvirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7 | High-quality | High-quality | 98.200 | AAI-based (high-confidence) | lytic | ||||
| NC_048626 | Pseudomonas phage PA01 | 66220 | 55.402 | Pseudomonas | Group I | Pbunavirus | Pbunavirus | Unclassified | Lindbergviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PAO1 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_048625 | Lactobacillus phage T25 | 38421 | 44.541 | Lactobacillus | Group I | Sukhumvitvirus | Sukhumvitvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus paracasei | High-quality | High-quality | 95.800 | AAI-based (high-confidence) | temperate | integrase orf_1;antirepressor orf_35 | |||
| NC_048624 | Staphylococcus phage phi7247PVL | 42481 | 33.309 | Staphylococcus | Group I | Biseptimavirus | Biseptimavirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_2;cro orf_8;antirepressor orf_15 | |||
| NC_048208 | Escherichia phage vB_EcoS_IME542 | 46553 | 43.568 | Escherichia | Group I | Christensenvirus | Christensenvirus | Braunvirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli BL21(DE3) | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic |