INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_048662 | Pseudomonas phage R12 | 65415 | 55.397 | Pseudomonas | Group I | Pbunavirus | Pbunavirus | Unclassified | Lindbergviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.040 | AAI-based (high-confidence) | lytic | ||||
| NC_048661 | Clostridium phage CPS1 | 19089 | 28.257 | Clostridium | Group I | Gregsiragusavirus | Gregsiragusavirus | Denniswatsonvirinae | Guelinviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium perfringens | Complete | High-quality | 100.000 | ITR (high-confidence) | lytic | ||||
| NC_048660 | Aeromonas phage phiA8-29 | 144974 | 48.180 | Aeromonas | Group I | Tedavirus | Tedavirus | Unclassified | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Aeromonas sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_59 | |||
| NC_048659 | Pectobacterium phage phiA41 | 75764 | 48.701 | Pectobacterium | Group I | Cbunavirus | Cbunavirus | Waldeevirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pectobacterium wasabiae SCC3193 | High-quality | High-quality | 99.560 | AAI-based (high-confidence) | lytic | ||||
| NC_048658 | Staphylococcus phage SA7 | 34730 | 34.129 | Staphylococcus | Group I | Peeveelvirus | Peeveelvirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | Medium-quality | Genome-fragment | 81.750 | AAI-based (high-confidence) | temperate | antirepressor orf_1;integrase orf_25 | |||
| NC_048657 | Staphylococcus phage IME1361_01 | 43516 | 32.850 | Staphylococcus | Group I | Biseptimavirus | Biseptimavirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus IME1361 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_7;cro orf_8;antirepressor orf_9;antirepressor orf_12;integrase orf_37 | |||
| NC_048656 | Klebsiella phage vB_KpnM_BIS47 | 147443 | 44.622 | Klebsiella | Group I | Mydovirus | Mydovirus | Vequintavirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | High-quality | High-quality | 99.870 | AAI-based (high-confidence) | lytic | ||||
| NC_048655 | Salmonella phage BSPM4 | 59097 | 56.541 | Salmonella | Group I | Chivirus | Chivirus | Unclassified | Casjensviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhimurium | High-quality | High-quality | 91.500 | AAI-based (high-confidence) | temperate | integrase orf_60 | |||
| NC_048654 | Pectobacterium phage vB_PatP_CB4 | 76621 | 48.643 | Pectobacterium | Group I | Cbunavirus | Cbunavirus | Waldeevirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pectobacterium atrosepticum DSM 30186 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_048653 | Pectobacterium phage vB_PatP_CB1 | 76041 | 48.691 | Pectobacterium | Group I | Cbunavirus | Cbunavirus | Waldeevirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pectobacterium atrosepticum DSM 18077 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic |