INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_048692 | Paenibacillus phage Leyra | 42276 | 41.395 | Paenibacillus | Group I | Fernvirus | Fernvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | antirepressor orf_29;integrase orf_30;antirepressor orf_33;antirepressor orf_35;antirepressor orf_39;integrase orf_58 | |||
| NC_048691 | Paenibacillus phage Tadhana | 37880 | 42.112 | Paenibacillus | Group I | Fernvirus | Fernvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae | High-quality | High-quality | 94.510 | AAI-based (high-confidence) | temperate | integrase orf_28;antirepressor orf_33;antirepressor orf_37 | |||
| NC_048690 | Paenibacillus phage Pagassa | 40035 | 42.001 | Paenibacillus | Group I | Fernvirus | Fernvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae | High-quality | High-quality | 99.890 | AAI-based (high-confidence) | temperate | integrase orf_28;antirepressor orf_35;antirepressor orf_40 | |||
| NC_048689 | Paenibacillus phage PBL1c | 40611 | 41.247 | Paenibacillus | Group I | Fernvirus | Fernvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | antirepressor orf_30;antirepressor orf_34;antirepressor orf_38;integrase orf_63 | |||
| NC_048688 | Paenibacillus phage BN12 | 39485 | 42.560 | Paenibacillus | Group I | Fernvirus | Fernvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae | High-quality | High-quality | 98.520 | AAI-based (high-confidence) | temperate | integrase orf_31;antirepressor orf_36;antirepressor orf_41 | |||
| NC_048687 | Pseudomonas phage PMBT14 | 47820 | 54.548 | Pseudomonas | Group I | Knuthellervirus | Knuthellervirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas fluorescens ATCC 13525 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_048686 | Streptomyces phage Immanuel3 | 46094 | 59.632 | Streptomyces | Group I | Immanueltrevirus | Immanueltrevirus | Beephvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces griseus ATCC 10137 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_048685 | Streptomyces phage Manuel | 45177 | 60.095 | Streptomyces | Group I | Manuelvirus | Manuelvirus | Beephvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces lividans JI 1326 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_048684 | Streptomyces phage WRightOn | 45221 | 60.313 | Streptomyces | Group I | Manuelvirus | Manuelvirus | Beephvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces viridochromogenes DSM40736 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_048683 | Salmonella phage KFS-SE1 | 59715 | 56.711 | Salmonella | Group I | Chivirus | Chivirus | Unclassified | Casjensviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Enteritidis | High-quality | High-quality | 92.540 | AAI-based (high-confidence) | temperate | integrase orf_57 |