INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_048712 | Clostridium phage susfortuna | 19046 | 29.224 | Clostridium | Group I | Susfortunavirus | Susfortunavirus | Unclassified | Guelinviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium perfringens SM3 | Complete | High-quality | 100.000 | ITR (high-confidence) | lytic | ||||
| NC_048711 | Staphylococcus phage SA780ruMSSAST101 | 43184 | 33.554 | Staphylococcus | Group I | Peeveelvirus | Peeveelvirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_6;cro orf_7;antirepressor orf_8;antirepressor orf_11 | |||
| NC_048710 | Staphylococcus phage SA1014ruMSSAST7 | 43504 | 33.080 | Staphylococcus | Group I | Biseptimavirus | Biseptimavirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_7;cro orf_8;antirepressor orf_10;integrase orf_33 | |||
| NC_048709 | Vibrio phage YC | 147890 | 47.330 | Vibrio | Group I | Campanilevirus | Campanilevirus | Unclassified | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio coralliilyticus P1 | High-quality | High-quality | 98.080 | AAI-based (high-confidence) | lytic | ||||
| NC_048708 | Rhodococcus phage Takoda | 46807 | 58.737 | Rhodococcus | Group I | Rerduovirus | Rerduovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhodococcus erythropolis RIA 643 | High-quality | High-quality | 99.460 | AAI-based (high-confidence) | temperate | integrase orf_25;immunity orf_52 | |||
| NC_048707 | Clostridium phage CPS2 | 17961 | 33.300 | Clostridium | Group I | Brucesealvirus | Brucesealvirus | Unclassified | Guelinviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium perfringens ATCC 13124 | Complete | High-quality | 100.000 | ITR (high-confidence) | lytic | ||||
| NC_048706 | Streptomyces phage FlowerPower | 46133 | 60.681 | Streptomyces | Group I | Flowerpowervirus | Flowerpowervirus | Beephvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces scabiei RL-34 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_048705 | Mycobacterium phage TChen | 57742 | 62.338 | Mycobacterium | Group I | Thetabobvirus | Thetabobvirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_42;antirepressor orf_45 | |||
| NC_048704 | Pectobacterium phage Nepra | 74509 | 48.701 | Pectobacterium | Group I | Cbunavirus | Cbunavirus | Waldeevirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pectobacterium atrosepticum DSM18077 | High-quality | High-quality | 97.860 | AAI-based (high-confidence) | lytic | ||||
| NC_048703 | Xanthomonas phage RiverRider | 76335 | 49.393 | Xanthomonas | Group I | Riverridervirus | Riverridervirus | Gebvirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Xanthomonas fragariae | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic |