INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_054989 | Brevibacterium phage AGM1 | 36032 | 60.774 | Brevibacterium | Group I | Agmunavirus | Agmunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Brevibacterium aurantiacum SMQ-1335 | High-quality | High-quality | 98.500 | AAI-based (high-confidence) | lytic | ||||
| NC_054988 | Leuconostoc phage Ln-7 | 28093 | 36.301 | Leuconostoc | Group I | Unaquatrovirus | Unaquatrovirus | Mccleskeyvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Leuconostoc mesenteroides subsp. mesenteroides D4b | High-quality | High-quality | 97.400 | AAI-based (high-confidence) | lytic | ||||
| NC_054987 | Leuconostoc phage P965 | 26526 | 36.504 | Leuconostoc | Group I | Limdunavirus | Limdunavirus | Mccleskeyvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Leuconostoc pseudomesenteroides | High-quality | High-quality | 98.850 | AAI-based (high-confidence) | lytic | ||||
| NC_054986 | Leuconostoc phage LDG | 26559 | 36.274 | Leuconostoc | Group I | Limdunavirus | Limdunavirus | Mccleskeyvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Leuconostoc pseudomesenteroides R707 | High-quality | High-quality | 98.900 | AAI-based (high-confidence) | lytic | ||||
| NC_054985 | Paenibacillus phage Wanderer | 40448 | 42.353 | Paenibacillus | Group I | Wanderervirus | Wanderervirus | Gochnauervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae | High-quality | High-quality | 99.430 | AAI-based (high-confidence) | temperate | integrase orf_24;antirepressor orf_29 | |||
| NC_054984 | Paenibacillus phage Dragolir | 41131 | 43.981 | Paenibacillus | Group I | Dragolirvirus | Dragolirvirus | Gochnauervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae | High-quality | High-quality | 97.350 | AAI-based (high-confidence) | temperate | integrase orf_31;antirepressor orf_35 | |||
| NC_054983 | Staphylococcus phage UPMK_2 | 40955 | 35.393 | Staphylococcus | Group I | Phietavirus | Phietavirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | methicillin-resistant Staphylococcus aureus spa type t223 | Complete | High-quality | 100.000 | DTR (high-confidence) | temperate | integrase orf_51;cro orf_53;cro orf_54;antirepressor orf_55 | |||
| NC_054982 | Staphylococcus phage Sebago | 43878 | 35.314 | Staphylococcus | Group I | Phietavirus | Phietavirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_1;integrase orf_33;antirepressor orf_61;cro orf_62 | |||
| NC_054981 | Staphylococcus phage vB_SauS-SAP27 | 43444 | 34.946 | Staphylococcus | Group I | Phietavirus | Phietavirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus subsp. aureus RN4220 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_10;antirepressor orf_38;cro orf_41;cro orf_42;integrase orf_45 | |||
| NC_054980 | Staphylococcus phage Henu2 | 43513 | 35.040 | Staphylococcus | Group I | Phietavirus | Phietavirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus N315 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_15;cro orf_18;antirepressor orf_20;antirepressor orf_23;integrase orf_42 |