INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_055029 | Paenibacillus phage Halcyone | 55560 | 48.560 | Paenibacillus | Group I | Halcyonevirus | Halcyonevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | antirepressor orf_35 | |||
| NC_055028 | Paenibacillus phage C7Cdelta | 55774 | 48.008 | Paenibacillus | Group I | Halcyonevirus | Halcyonevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_22;antirepressor orf_29 | |||
| NC_055027 | Lactococcus phage CHPC971 | 54381 | 34.062 | Lactococcus | Group I | Fremauxvirus | Fremauxvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 97.810 | AAI-based (high-confidence) | lytic | ||||
| NC_055026 | Ralstonia phage Dina | 39161 | 65.274 | Ralstonia | Group I | Dinavirus | Dinavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Ralstonia pseudosolanacearum I-15 (MT017) | Complete | High-quality | 100.000 | DTR (high-confidence) | temperate | integrase orf_55 | |||
| NC_055025 | Staphylococcus phage vB_SpsM_WIS42 | 40093 | 35.695 | Staphylococcus | Group I | Coventryvirus | Coventryvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus pseudintermedius | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_26;cro orf_32;cro orf_33;cro orf_34;antirepressor orf_39 | |||
| NC_055024 | Staphylococcus phage SpT152 | 41087 | 35.537 | Staphylococcus | Group I | Coventryvirus | Coventryvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus pseudintermedius strain E139 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_2;cro orf_7;antirepressor orf_12 | |||
| NC_055023 | Staphylococcus phage SP276 | 40147 | 35.353 | Staphylococcus | Group I | Coventryvirus | Coventryvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus pseudintermedius | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | cro orf_16;antirepressor orf_21 | |||
| NC_055022 | Staphylococcus phage SP197 | 41149 | 35.673 | Staphylococcus | Group I | Coventryvirus | Coventryvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus pseudintermedius | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | cro orf_53;cro orf_54;cro orf_55;antirepressor orf_60 | |||
| NC_055021 | Staphylococcus phage SP120 | 40530 | 34.991 | Staphylococcus | Group I | Coventryvirus | Coventryvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus pseudintermedius | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | cro orf_21;antirepressor orf_26 | |||
| NC_055020 | Staphylococcus phage SN8 | 39803 | 35.791 | Staphylococcus | Group I | Coventryvirus | Coventryvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus pseudintermedius E140 | High-quality | High-quality | 99.910 | AAI-based (high-confidence) | temperate | integrase orf_26;cro orf_32;cro orf_33;cro orf_34;antirepressor orf_39 |