INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_055049 | Staphylococcus phage phiSa2wa_st121mssa | 45621 | 33.057 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus subsp. aureus K25S genotype ST121-MSSA | High-quality | High-quality | 98.290 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_6;integrase orf_29 | |||
| NC_055048 | Staphylococcus phage phiSa2wa_st78 | 45878 | 33.216 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus subsp. aureus RNSH95 genotype ST78-MRSA-IVa (2B) | Complete | High-quality | 100.000 | DTR (high-confidence) | temperate | integrase orf_1;integrase orf_33 | |||
| NC_055047 | Staphylococcus phage phiSa2wa_st30 | 45780 | 33.438 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus subsp. aureus 16663 genotype ST30-MRSA-IVc (2B) | High-quality | High-quality | 98.490 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_6;antirepressor orf_8;integrase orf_28 | |||
| NC_055046 | Staphylococcus phage phiSa2wa_st5 | 44823 | 33.407 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus subsp. aureus 18790 genotype ST5-MRSA-IVa (2B) | High-quality | High-quality | 96.300 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_6;antirepressor orf_8;integrase orf_42 | |||
| NC_055045 | Staphylococcus phage phiSa2wa_st1 | 45585 | 33.281 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus subsp. aureus strain WBG8287 genotype ST1-MRSA-IVa (2B) | High-quality | High-quality | 98.140 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_7;antirepressor orf_9;integrase orf_29 | |||
| NC_055044 | Staphylococcus phage SAP11 | 45346 | 33.419 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus KCCM 12103 | High-quality | High-quality | 97.650 | AAI-based (high-confidence) | temperate | integrase orf_26;integrase orf_60 | |||
| NC_055043 | Staphylococcus phage SA137ruMSSAST121PVL | 45999 | 33.305 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 99.090 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_5;integrase orf_31 | |||
| NC_055042 | Staphylococcus phage P240 | 45985 | 33.111 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 99.090 | AAI-based (high-confidence) | temperate | integrase orf_31;integrase orf_60 | |||
| NC_055041 | Staphylococcus phage LH1 | 46048 | 33.191 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 99.210 | AAI-based (high-confidence) | temperate | integrase orf_27;cro orf_31;antirepressor orf_33;integrase orf_54 | |||
| NC_055040 | Staphylococcus phage vB_SauS_JS02 | 46435 | 33.143 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_2;integrase orf_3;cro orf_9;integrase orf_31 |