INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_060131 | Gordonia phage Neville | 75813 | 58.752 | Gordonia | Group I | Nevillevirus | Nevillevirus | Deeyouvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 99.440 | AAI-based (high-confidence) | temperate | integrase orf_7 | |||
| NC_056724 | Lactococcus phage BK5-T | 40003 | 34.975 | Lactococcus | Group I | Sandinevirus | Sandinevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_23;cro orf_25;cro orf_27;antirepressor orf_28 | |||
| NC_055956 | Klebsiella phage RAD2 | 49276 | 50.388 | Klebsiella | Group I | Webervirus | Webervirus | Unclassified | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae B5055 | High-quality | High-quality | 99.460 | AAI-based (high-confidence) | lytic | ||||
| NC_055921 | Salmonella phage vB_SalP_TR2 | 70823 | 40.646 | Salmonella | Group I | Triduovirus | Triduovirus | Humphriesvirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Albany | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_055920 | Gordonia phage Phlop | 58358 | 67.944 | Gordonia | Group I | Wizardvirus | Wizardvirus | Frickvirinae | Stackebrandtviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 98.400 | AAI-based (high-confidence) | temperate | immunity orf_21;integrase orf_44;integrase orf_47 | |||
| NC_055919 | Klebsiella phage vB_KpnP_P184 | 76617 | 44.340 | Klebsiella | Group I | Efbeekayvirus | Efbeekayvirus | Waldeevirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae 184 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | cro orf_1 | |||
| NC_055918 | Mycobacterium phage OhShagHennessy | 72623 | 58.875 | Mycobacterium | Group I | Bronvirus | Bronvirus | Lclasvirinae | Vilmaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 96.060 | AAI-based (high-confidence) | temperate | integrase orf_34;cro orf_37 | |||
| NC_055917 | Bacillus phage WhyPhy | 18642 | 34.948 | Bacillus | Group I | Bundooravirus | Bundooravirus | Unclassified | Salasmaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus pumilus SAFR-032 | High-quality | High-quality | 90.140 | AAI-based (medium-confidence) | lytic | ||||
| NC_055916 | Staphylococcus phage LSA2366 | 17056 | 29.397 | Staphylococcus | Group I | Rosenblumvirus | Rosenblumvirus | Rakietenvirinae | Rountreeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus ATCC 25923 | High-quality | High-quality | 96.460 | AAI-based (high-confidence) | lytic | ||||
| NC_055915 | Flavobacterium phage vB_FspM_immuto_2-6A | 160410 | 34.520 | Flavobacterium | Group I | Immutovirus | Immutovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Flavobacterium sp. LMO8 | High-quality | High-quality | 95.580 | AAI-based (high-confidence) | lytic |