INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_101774 | Enterococcus phage PBEF129 | 141520 | 35.907 | Enterococcus | Group I | Kochikohdavirus | Kochikohdavirus | Brockvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_101653 | Enterococcus phage vB_EfaS-DELF1 | 40248 | 34.931 | Enterococcus | Group I | Delfunavirus | Delfunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis | High-quality | High-quality | 95.790 | AAI-based (high-confidence) | lytic | ||||
| NC_101270 | Salmonella phage vB_SenS_SB10 | 111347 | 40.057 | Salmonella | Group I | Epseptimavirus | Epseptimavirus | Markadamsvirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- | High-quality | High-quality | 98.430 | AAI-based (high-confidence) | lytic | ||||
| NC_100761 | Klebsiella phage vB_KpnS_Penguinator | 51678 | 51.505 | Klebsiella | Group I | Webervirus | Webervirus | Unclassified | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Webervirus | Webervirus penguinator | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| NC_100756 | Klebsiella phage vB_KpnS_KingDDD | 51562 | 51.581 | Klebsiella | Group I | Webervirus | Webervirus | Unclassified | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Webervirus | Webervirus kingDDD | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| NC_100739 | Salmonella phage SE3 | 114437 | 39.871 | Salmonella | Group I | Epseptimavirus | Epseptimavirus | Markadamsvirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_100732 | Shigella phage CM1 | 139598 | 43.535 | Shigella | Group I | Vequintavirus | Vequintavirus | Vequintavirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli DH5alpha | High-quality | High-quality | 99.500 | AAI-based (high-confidence) | lytic | ||||
| NC_100567 | Salmonella phage vB_SenS_SB9 | 113979 | 39.911 | Salmonella | Group I | Epseptimavirus | Epseptimavirus | Markadamsvirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Saintpaul | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_100383 | Enterococcus phage vB_OCPT_Ben | 151985 | 37.089 | Enterococcus | Group I | Schiekvirus | Schiekvirus | Brockvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis EnGen0211 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_100372 | Escherichia phage vB_EcoM-ECP32 | 133317 | 43.687 | Escherichia | Group I | Vequintavirus | Vequintavirus | Vequintavirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli NCCP 13930 | High-quality | High-quality | 95.070 | AAI-based (high-confidence) | lytic |