INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

Explore INPHARED2 data visually

Create interactive summaries of genome metadata and download the resulting figures.

Open graphs

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

Host (NCBI)

Family (NCBI)

Genus (TaxMyPhage)

CheckV quality

PhageLeads lifestyle

Rows

Clear

Choose fields for download

37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle
OK585159	Vibrio phage vB_VpP_HA5	43210	49.426	Vibrio	Group I	Maculvirus	Maculvirus	Unclassified	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Vibrio parahaemolyticus	High-quality	High-quality	99.630	AAI-based (high-confidence)	Maculvirus	Maculvirus HA5	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OK585158	Vibrio phage vB_VpP_HA1	42987	49.180	Vibrio	Group I	Maculvirus	Maculvirus	Unclassified	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Vibrio parahaemolyticus	High-quality	High-quality	99.110	AAI-based (high-confidence)	Maculvirus	Maculvirus HA1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OK583893	Klebsiella phage KPPK108.2	43834	54.049	Klebsiella	Group I	Drulisvirus	Drulisvirus	Slopekvirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae strain 1732/P-224	Complete	High-quality	100.000	DTR (high-confidence)	Drulisvirus	Drulisvirus KPPK1082	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OK583892	Klebsiella phage KPPK108.1	43755	53.603	Klebsiella	Group I	Drulisvirus	Drulisvirus	Slopekvirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae strain 1333/P-225	Complete	High-quality	100.000	DTR (high-confidence)	Drulisvirus	Drulisvirus KPPK1081	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OK574338	Staphylococcus phage vB_SurP-PSU3	18146	30.067	Staphylococcus	Group I	Andhravirus	Andhravirus	Rakietenvirinae	Rountreeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus ureilyticus ATCC 49330	Complete	High-quality	100.000	ITR (high-confidence)	Andhravirus	Andhravirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OK570374	Escherichia phage UoN_LG358_1	136254	36.764	Escherichia	Group I	Gelderlandvirus	Gelderlandvirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia sp.	Medium-quality	Genome-fragment	80.830	AAI-based (high-confidence)	Gelderlandvirus	Gelderlandvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OK570186	Pantoea phage Nafs113	75899	54.067	Pantoea	Group I	Lietduovirus	Lietduovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pantoea agglomerans	High-quality	High-quality	100.000	AAI-based (high-confidence)	Lietduovirus	Lietduovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OK570185	Pantoea phage Nufs112	45951	47.701	Pantoea	Group I	Hapakavirus	Hapakavirus	Unclassified	Unclassified	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pantoea agglomerans	Complete	High-quality	100.000	DTR (high-confidence)	Hapakavirus	Hapakavirus Nufs112	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OK570184	Pantoea phage Nifs112	46202	50.214	Pantoea	Group I	Eracentumvirus	Eracentumvirus	Molineuxvirinae	Autosignataviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pantoea agglomerans	Complete	High-quality	100.000	DTR (high-confidence)	Eracentumvirus	Eracentumvirus Nifs112	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OK562670	Stenotrophomonas phage vB_SM_ytsc_ply2008005c	42318	63.020	Stenotrophomonas	Group I	Shangdongvirus	Shangdongvirus	Queuovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Stenotrophomonas maltophilia	High-quality	High-quality	100.000	AAI-based (high-confidence)	Shangdongvirus	Shangdongvirus ply2008005c	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic