INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
OL539470	Cronobacter phage vB_CsaM_Invicta	179053	44.746	Cronobacter	Group I	Pseudotevenvirus	Pseudotevenvirus	Unclassified	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Cronobacter sakazakii	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pseudotevenvirus	Pseudotevenvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OL539469	Proteus phage vB_PmiP_Brookers	40152	40.698	Proteus	Group I	Lederbergvirus	Lederbergvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Proteus mirabilis	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_18
OL539468	Serratia phage vB_SmaM_Haymo	274604	46.807	Serratia	Group I	Moabitevirus	Moabitevirus	Unclassified	Chimalliviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Serratia marcescens	High-quality	High-quality	99.050	AAI-based (high-confidence)	Moabitevirus	Moabitevirus moabite	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OL539467	Escherichia phage vB_EcoD_Sadiya	48303	44.683	Escherichia	Group I	Sadiyavirus	Sadiyavirus	Rogunavirinae	Drexlerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Serratia marcescens	High-quality	High-quality	100.000	AAI-based (high-confidence)	Sadiyavirus	Sadiyavirus sadiya	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OL539466	Citrobacter phage vB_CfrD_SorkZaugg	50023	42.750	Citrobacter	Group I	Tlsvirus	Tlsvirus	Tempevirinae	Drexlerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Citrobacter freundii	High-quality	High-quality	99.460	AAI-based (high-confidence)	Tlsvirus	Tlsvirus sorkzaugg	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_82
OL539465	Citrobacter phage vB_CfrD_Reinasaurus	48103	42.889	Citrobacter	Group I	Tlsvirus	Tlsvirus	Tempevirinae	Drexlerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Citrobacter freundii	High-quality	High-quality	95.420	AAI-based (high-confidence)	Tlsvirus	Tlsvirus blueshaddow	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_75
OL539464	Serratia phage vB_SmaS_Stoker	41797	46.377	Serratia	Group I	Bonzeevirus	Bonzeevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Serratia marcescens	High-quality	High-quality	100.000	AAI-based (medium-confidence)	Bonzeevirus	Bonzeevirus stocker	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OL539462	Citrobacter phage vB_CfrD_BlueShadow	49619	42.828	Citrobacter	Group I	Tlsvirus	Tlsvirus	Tempevirinae	Drexlerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Citrobacter freundii	High-quality	High-quality	98.440	AAI-based (high-confidence)	Tlsvirus	Tlsvirus blueshaddow	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_79
OL539461	Citrobacter phage_vB_CfrD_Devorator	49712	42.869	Citrobacter	Group I	Tlsvirus	Tlsvirus	Tempevirinae	Drexlerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Citrobacter freundii	High-quality	High-quality	98.610	AAI-based (high-confidence)	Tlsvirus	Tlsvirus mishy	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_79
OL539460	Klebsiella phage vB_KpnD_FairDinkum	49111	50.677	Klebsiella	Group I	Webervirus	Webervirus	Unclassified	Drexlerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae	High-quality	High-quality	99.130	AAI-based (high-confidence)	Webervirus	Webervirus fairdinkum	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic