INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PZ579142 | Arthrobacter phage Elfy | 46421 | 65.673 | Arthrobacter | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Paeniglutamicibacter sulfureus ATCC 19098 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_49;integrase orf_70 |
| PZ579141 | Gordonia phage Colossa | 84865 | 67.688 | Gordonia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Gordonia rubripertincta NRRL B-16540 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Vanleevirus | Vanleevirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_5;integrase orf_31;integrase orf_119 |
| PZ579140 | Mycobacterium phage Caitlin | 52196 | 61.386 | Mycobacterium | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.630 | AAI-based (high-confidence) | Fromanvirus | Fromanvirus astro | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_28;immunity orf_79 |
| PZ578792 | Vibrio phage vB_Vca_TA2 | 55794 | 46.168 | Vibrio | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Vibrio campbellii BB120 | High-quality | High-quality | 94.710 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PZ578652 | Pseudomonas phage ZM01 | 94454 | 49.330 | Pseudomonas | Group I | Pakpunavirus | Pakpunavirus | Skurskavirinae | Vandenendeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PAO1/ATCC 15692 | Complete | High-quality | 100.000 | DTR (high-confidence) | Pakpunavirus | Pakpunavirus EPA1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_87 |
| PZ575430 | Gordonia phage Wolfwood | 45308 | 61.910 | Gordonia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Gordonia rubripertincta NRRL B-16540 | High-quality | High-quality | 97.770 | AAI-based (high-confidence) | Aziravirus | Aziravirus azira | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PZ575429 | Arthrobacter phage Roberts | 39638 | 58.873 | Arthrobacter | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Arthrobacter globiformis B-2979 | Medium-quality | Genome-fragment | 68.740 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PZ575428 | Gordonia phage Ravana | 52601 | 61.738 | Gordonia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Gordonia terrae CAG3 | High-quality | High-quality | 99.400 | AAI-based (high-confidence) | Soupsvirus | Soupsvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | parA orf_31;immunity orf_79 |
| PZ575427 | Arthrobacter phage MillySue | 42145 | 65.161 | Arthrobacter | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Arthrobacter globiformis B-2979 | High-quality | High-quality | 99.200 | AAI-based (high-confidence) | Nanditavirus | Nanditavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_35;integrase orf_37 |
| PZ575426 | Mycobacterium phage KingPhillip3 | 71330 | 65.396 | Mycobacterium | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.070 | AAI-based (high-confidence) | Corndogvirus | Corndogvirus catdawg | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |