INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
OM386657	Escherichia phage vB_EcoS_ESCO30	112115	38.940	Escherichia	Group I	Tequintavirus	Tequintavirus	Markadamsvirinae	Demerecviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli DH5a	High-quality	High-quality	99.170	AAI-based (high-confidence)	Tequintavirus	Tequintavirus ESCO30	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
OM386656	Escherichia phage vB_EcoM_ESCO25	149073	39.028	Escherichia	Group I	Phapecoctavirus	Phapecoctavirus	Stephanstirmvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli APEC BEN3573	Complete	High-quality	100.000	DTR (high-confidence)	Phapecoctavirus	Phapecoctavirus ESCO13	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OM386655	Escherichia phage vB_EcoM_ESCO10	171100	39.136	Escherichia	Group I	Dhakavirus	Dhakavirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli DH5a	High-quality	High-quality	100.000	AAI-based (high-confidence)	Dhakavirus	Dhakavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_69
OM386654	Escherichia phage vB_EcoM_ESCO9	145392	37.411	Escherichia	Group I	Justusliebigvirus	Justusliebigvirus	Stephanstirmvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli DH5a	Complete	High-quality	100.000	DTR (high-confidence)	Justusliebigvirus	Justusliebigvirus alia	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OM386653	Escherichia phage vB_EcoM_ESCO8	148860	37.533	Escherichia	Group I	Justusliebigvirus	Justusliebigvirus	Stephanstirmvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli APEC BEN3573	High-quality	High-quality	98.480	AAI-based (high-confidence)	Justusliebigvirus	Justusliebigvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OM386652	Escherichia phage vB_EcoS_ESCO3	59956	43.759	Escherichia	Group I	Nonagvirus	Nonagvirus	Queuovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli DH5a	High-quality	High-quality	100.000	AAI-based (high-confidence)	Nonagvirus	Nonagvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OM373561	Staphylococcus phage vB_SpsX-DSP2	41107	35.155	Staphylococcus	Group I	Fibralongavirus	Fibralongavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus pseudintermedius	High-quality	High-quality	99.650	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_27;cro orf_29
OM373560	Staphylococcus phage vB_SpsX-DSP1	16895	28.139	Staphylococcus	Group I	Rakietenvirinae	Unclassified	Rakietenvirinae	Rountreeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus pseudintermedius	High-quality	High-quality	94.690	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
OM373559	Staphylococcus phage vB_SpsX-DS12	43755	36.327	Staphylococcus	Group I	Triavirus	Triavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus pseudintermedius	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_30;cro orf_34
OM373558	Staphylococcus phage vB_SpsX-DS11	38381	36.229	Staphylococcus	Group I	Fibralongavirus	Fibralongavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus pseudintermedius	High-quality	High-quality	94.700	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_25