INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OM439664 | Staphylococcus phage vB_SauS_308 | 39968 | 34.112 | Staphylococcus | Group I | Peeveelvirus | Peeveelvirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 94.510 | AAI-based (high-confidence) | Peeveelvirus | Peeveelvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_5;cro orf_6;antirepressor orf_8;integrase orf_39 |
| OM439663 | Staphylococcus phage vB_SauS_287 | 43134 | 34.745 | Staphylococcus | Group I | Phietavirus | Phietavirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Phietavirus | Phietavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;antirepressor orf_8;integrase orf_38 |
| OM439662 | Staphylococcus phage vB_SauS_277g | 44016 | 34.063 | Staphylococcus | Group I | Dubowvirus | Dubowvirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Dubowvirus | Dubowvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;antirepressor orf_7 |
| OM421595 | Pseudomonas phage vB_PaeM_VL12 | 88451 | 54.753 | Pseudomonas | Group I | Nankokuvirus | Nankokuvirus | Unclassified | Vandenendeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa ATCC27853 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Nankokuvirus | Nankokuvirus KPP10 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OM418631 | Pseudomonas phage UFJF_PfDIW6 | 42322 | 58.279 | Pseudomonas | Group I | Purivirus | Purivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas fluorescens UFV 041 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Purivirus | Purivirus UFJFPfDIW6 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_22 |
| OM418627 | Escherichia phage Lambda h434 imm21 | 43452 | 50.999 | Escherichia | Group I | Lambdavirus | Lambdavirus | Jacobvirinae | Zimmerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 92.930 | AAI-based (high-confidence) | Lambdavirus | Lambdavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_27;cro orf_41;antirepressor orf_42 |
| OM418626 | Escherichia phage Lambda imm434 | 47326 | 50.080 | Escherichia | Group I | Lambdavirus | Lambdavirus | Jacobvirinae | Zimmerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Lambdavirus | Lambdavirus lambda | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_28;cro orf_44;antirepressor orf_45 |
| OM418625 | Escherichia phage Lambda imm21 | 46148 | 50.286 | Escherichia | Group I | Lambdavirus | Lambdavirus | Jacobvirinae | Zimmerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 98.740 | AAI-based (high-confidence) | Lambdavirus | Lambdavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_27;cro orf_41;antirepressor orf_42 |
| OM416780 | Prochlorococcus phage P-SCSP2 | 37264 | 34.213 | Prochlorococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Prochlorococcus sp. MED4 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OM416779 | Prochlorococcus phage P-SCSP1u | 37861 | 38.681 | Prochlorococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Prochlorococcus sp. MED4 | High-quality | High-quality | 99.240 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic |