INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
OM913583	Mycobacterium phage Nutello	56439	67.088	Mycobacterium	Group I	Anayavirus	Anayavirus	Weiservirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	92.180	AAI-based (high-confidence)	Anayavirus	Anayavirus amelie	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_35;immunity orf_37
OM912979	Salmonella phage CF-SP1	47771	45.032	Salmonella	Group I	Swiduovirus	Swiduovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Paratyphi A	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	lytic
OM912978	Salmonella phage CF-SP2	159658	36.955	Salmonella	Group I	Gelderlandvirus	Gelderlandvirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serova Typhi	High-quality	High-quality	94.930	AAI-based (high-confidence)	Gelderlandvirus	Gelderlandvirus melville	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OM908766	Salmonella phage S5	72519	39.446	Salmonella	Group I	Ithacavirus	Ithacavirus	Humphriesvirinae	Schitoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella sp.	High-quality	High-quality	100.000	AAI-based (high-confidence)	Ithacavirus	Ithacavirus S5	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OM908436	Escherichia phage TM1	39948	50.025	Escherichia	Group I	Kayfunavirus	Kayfunavirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia sp. GXEC-TM1	Complete	High-quality	100.000	DTR (high-confidence)	Kayfunavirus	Kayfunavirus TM1	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
OM897575	Leptolyngbya phage Lbo240-yong1	39740	51.993	Leptolyngbya	Group I	Wumpquatrovirus	Wumpquatrovirus	Unclassified	Saffermanviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Leptolyngbya boryana FACHB-240	High-quality	High-quality	97.070	AAI-based (high-confidence)	Wumpquatrovirus	Wumpquatrovirus Lbo240yong1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OM892879	Burkholderia phage PhiBP82.1	54921	60.678	Burkholderia	Group I	Stanholtvirus	Stanholtvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Burkholderia pseudomallei BP82	High-quality	High-quality	100.000	AAI-based (high-confidence)	Stanholtvirus	Stanholtvirus sv1026b	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
OM870970	Pseudomonas phage vB_Paer_PsIn	92515	49.280	Pseudomonas	Group I	Pakpunavirus	Pakpunavirus	Skurskavirinae	Vandenendeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	High-quality	High-quality	99.480	AAI-based (high-confidence)	Pakpunavirus	Pakpunavirus PsIn	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OM870969	Pseudomonas phage vB_Paer_PsCh	92710	49.304	Pseudomonas	Group I	Pakpunavirus	Pakpunavirus	Skurskavirinae	Vandenendeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	High-quality	High-quality	99.680	AAI-based (high-confidence)	Pakpunavirus	Pakpunavirus PsCh	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OM870968	Pseudomonas phage vB_Paer_Ps25	87887	49.126	Pseudomonas	Group I	Pakpunavirus	Pakpunavirus	Skurskavirinae	Vandenendeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	High-quality	High-quality	94.500	AAI-based (high-confidence)	Pakpunavirus	Pakpunavirus Ps12	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic